Salvia splendens (scarlet sage): 121809458
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Entry
121809458 CDS
T07627
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03082
ATP-dependent chromatin remodeling
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121809458
03083 Polycomb repressive complex
121809458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121809458
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121809458
Histone modification proteins
HAT complexes
HATB complex
121809458
HDAC complexes
Sin3A-HDAC complex
121809458
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121809458
PRC2.2
121809458
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121809458
Heterochromatin formation proteins
Other heterochromatin formation proteins
121809458
Chromatin remodeling factors
NuRD complex
121809458
NuRF complex
121809458
NuRF complex (fruit fly)
121809458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_RFWD3
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
WD_LRWD1
eIF2A
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
121809458
NCBI-ProteinID:
XP_042066027
LinkDB
All DBs
Position
6:32286505..32290240
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRQEPPGKD
YSVQKMILGTHTSENEPNYLMVAQAQLPLEDAENDARQYEDERSEFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE
GYGLSWSQFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE
YLFGSVGDDQYLHIWDLRNPSMSKPAQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL
FDMRKLSTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMIWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDS
TKAS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggacgaaatgcgtggggaaatcgaggagcgccttgtcaacgaggag
tacaagatttggaagaagaacaccccctttctgtacgatctggtaatcacccacgccctc
gaatggccatccctcaccgtcgagtggctgcccgaccgccaggagcctccgggtaaggat
tactccgtccagaagatgatcctcggcacccacacctccgagaatgagcccaattatttg
atggtggctcaggctcagctgcccctcgaggatgctgagaatgatgctcgccagtacgaa
gatgagcgctctgaattcggcggtttcggctgcgctaatggcaaggtgcaaatcattcag
caaattaatcatgatggggaagtgaatcgtgctcgctatatgcctcaaaacccgtttatt
attgccactaagactgttagtgcagaagtttatgtctttgattatagcaagcatccttct
aagcctccgttggatggtgcgtgcaaccctgatttgaggcttaggggccatagtaccgag
ggatatggtttatcatggagccagttcaagcagggtcatttgttgagtggttcagatgat
gcccaaatatgtttatgggacataaatgcgactccaaagaataaggctttagatgcaatg
caaattttcaagattcatgaaggcgtggttgaagatgtagcgtggcatcttaggcatgaa
tacttgtttgggtctgttggagacgatcagtatttgcacatatgggatcttcgtaatcca
tcaatgagcaagcctgcacaatctgtagttgctcatcagagtgaggtaaactgcttagcc
ttcaatccatttaacgagtggattttagcaaccgggtctactgacaagactgttaaatta
tttgatatgcgaaagctttctactgccctccacacctttgattgccacaaggaggaggtt
ttccaggttggatggaacccaaaaaacgagaccatcttagcttcttgttgtcttggtagg
agattaatgatctgggatcttagcaggattgacgaagaacaaacaccagaggatgcggag
gatgggccaccagagttgttattcattcatggtggtcatacaagcaagatttcagacttt
tcatggaatccatgtgaggactgggttgttgctagtgtggccgaagataatatactgcaa
atttggcagatggcagaaaacatctaccacgacgaagatgatctgccaggggatgattct
accaaagcttcctag
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