KEGG   Salvia splendens (scarlet sage): 121809462
Entry
121809462         CDS       T07627                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl04120  Ubiquitin mediated proteolysis
sspl04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121809462
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    121809462
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sspl04121]
    121809462
Enzymes [BR:sspl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121809462
Ubiquitin system [BR:sspl04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121809462
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     121809462
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd EIF3I zf-C3HC4_2 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 zf-C3HC4 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 zf-C3HC4_3 Beta-prop_IFT140_1st zf-RING_2 Beta-prop_WDR75_1st U-box WD40_MABP1-WDR62_1st WD40_like zf-RING_UBOX Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 YbfN zf-C3HC4_4 eIF2A Beta-prop_SCAP DUF1664 Beta-prop_DCAF12 zf-RING_5 WDR90_beta-prop_4th YpoC zf-Nse zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 121809462
NCBI-ProteinID: XP_042066033
LinkDB
Position
6:complement(6695497..6701562)
AA seq 662 aa
MEDCSTTFTVPAADHTGDPAPEAEDKELSCPICMQIMKDVFLTSCGHSFCYMCIVTHLHN
KSDCPCCAQFLTPSQLFPNFLLNKLLKKTSAHQLSKLASPVEQFRHSLEQGCQVSVKELD
SLVSLVTEKKRKLEQEEAERNMQILLDFLHCLRKQKVNELNEVQSDLQYIKEDLNSVERH
RIELYQARERCSVKLKILSSDHLGIRSRTSSRPMDRIISGHVSNSYNIRGITSMNFQYTK
DEAKAQVNNIPRTQSKEAAPSEPTSQHMSQSGLAVMRKKRVHAQFNELQEFYLQKRRQLV
NQIEKQGNKDNTIIRREGYSSGLADFQSVLSTFTRFSRLRVIAELRHSDLFHSPNIVSSI
EFDRDDELFATAGVSRRIKVFDFSSVVNEPTDVHCPVVEMTTRSKLSCLSWNKFMKNHIA
SSDYEGIVTVWDAGTQQSIMEYEEHEKRAWSVDFSSTEPSMLVSGSDDCKVKIWCTKQEG
SVLNIDMKTNICCVKYNPESSKFVAIGSADHHIHYYDLRNPCHPVSVFSGHNKAVSYVKF
LSSNELASASTDSTLRLWDVKDNLLLYFKVRTFRGHTNEKNFVGLTVNNDFLACGSETNE
VSVYHKAITKPVTWHKFGSPDVEDVEEDAGSYFISAVCWKVGSPTVLAANSRGTIKVLAL
TA
NT seq 1989 nt   +upstreamnt  +downstreamnt
atggaggattgttcgacgaccttcacagtgccggcggcggatcacactggagatccagct
ccggaggcggaggataaggagttgtcgtgcccaatttgtatgcagattatgaaggacgtc
ttcctaacctcgtgcggccatagcttctgctacatgtgcatcgtcactcatctccacaac
aagagcgattgcccctgctgcgctcagtttctcactccatctcagctcttccccaatttt
ctcctcaacaagctattgaagaagacatctgcccatcaactatcaaaattagcatctcct
gtagaacaatttcgtcattcgctggaacagggctgtcaagtgtcagtgaaggagttagac
tctctagtgtctctggtgacagagaaaaagagaaaattggaacaagaagaagcagagaga
aacatgcagattctgctggacttcttacactgcttaaggaagcaaaaagttaatgaactc
aacgaggtgcaaagtgatctgcaatacatcaaggaagacttaaactctgtggaaagacat
aggatagagctgtaccaagcaagagaaaggtgttcagttaaactgaagattctctctagt
gatcatcttggaattagatcccgcacttcctctaggccaatggatagaatcatttcaggc
catgtgtccaactcttacaacataagaggaattacttctatgaacttccagtacactaaa
gacgaagcgaaagctcaagttaataatatccctcgaacccagagcaaggaagctgctccg
agcgaaccaacttcacaacatatgagccaatctggtttggcagttatgcggaaaaagcga
gtccatgcacagtttaacgaacttcaggaattttacttacaaaagagacgtcaattggtc
aaccaaatagagaagcaaggaaataaagataacaccatcattagaagagaaggttatagt
tccggtttagcagatttccagtcagttctaagtacgtttactcggttcagtcgattacga
gtaattgctgaacttagacacagtgacctattccactcacccaatatcgtttcaagtata
gagtttgatcgggatgatgagctgtttgctactgctggagtttcacggcggataaaagtt
tttgatttttcatcggttgtgaacgaacctacagatgtgcattgccctgttgttgagatg
actactcgatctaagcttagctgcttgagctggaataagttcatgaaaaatcacatagct
agtagtgattatgagggcatagtaactgtctgggatgctggtactcaacaaagtatcatg
gaatatgaggagcacgagaaacgggcatggagtgttgatttctcctcaacagagccatca
atgctcgtttctggtagtgatgactgcaaggtaaaaatttggtgcacaaagcaagaaggt
agtgttctcaacattgatatgaagacaaatatatgctgtgtgaagtacaatcccgagtcc
agcaaatttgttgcgattggctctgcagatcaccatattcactactatgacttgagaaat
ccctgccatccagtctctgtgttcagtggtcataataaggcagtttcatatgtgaaattc
ctctccagcaacgagcttgcttctgcttcaacagatagcactctccggctatgggatgtg
aaggacaatctgctcctgtattttaaggtccgtacatttagagggcacaccaacgagaag
aatttcgtaggcctaactgtcaacaatgatttcctagcttgtggcagcgaaacaaatgaa
gtctctgtctatcacaaggctattacgaaacccgtgacatggcataaatttggatccccg
gatgtcgaggacgtcgaggaagatgcaggatcttacttcataagcgcagtatgctggaaa
gttggaagtcccaccgtattagctgccaacagtagaggaacaatcaaggtgttggccctg
actgcttga

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