Salvia splendens (scarlet sage): 121809583
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Entry
121809583 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121809583
09122 Translation
03013 Nucleocytoplasmic transport
121809583
03015 mRNA surveillance pathway
121809583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121809583
03041 Spliceosome [BR:
sspl03041
]
121809583
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121809583
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121809583
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121809583
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121809583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
121809583
NCBI-ProteinID:
XP_042066232
LinkDB
All DBs
Position
6:complement(6423081..6427383)
Genome browser
AA seq
428 aa
AA seq
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MGDTKDNEAYEEELLDYEEEEEKAPDSVIAKVNGESGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaccaaagacaacgaagcttacgaagaggaactcctcgactacgaggaagaa
gaagaaaaagcccccgattcggtcatcgccaaagtcaacggagagtccggcaagaaaggc
tatgtggggatccacagttcaggattcagagacttcctcttgaagccagagctcttgagg
gctattgtggattcaggatttgagcatccttcagaagttcaacacgagtgcatacctcaa
gctattttgggaatggatgtcatctgccaagccaagtctggcatggggaaaactgctgtc
tttgttctttcgacattgcagcagattgaacccattgcaggtcaagttgctgcacttgtg
ctatgccacacaagggaactggcttatcagatctgtcatgaatttgagcgattcagcacc
tatttgccagatattaaagttgcagttttctatggtggagtcaacgttaagattcacaaa
gatcttctgaagaatgaatgccctcacattgtggtaggaacaccgggaaggatacttggt
ctagcaagagacaaggacctttctttaaggaatgtgaggcatttcatccttgatgaatgt
gacaagatgctcgagtctcttgatatgagaagagacgtgcaggagattttcaaaatgaca
ccgcatgacaaacaagttatgatgttttcggctacactcagtaaagagattcgacctgtt
tgcaaaaagttcatgcaagatccgatggagatttacgtggatgatgaggcgaagttaacc
cttcatggtcttgtacagcactacatcaaactgagtgagctggagaagaaccggaagctg
aatgatctgctggatgcattggatttcaatcaagttgttatctttgtcaaaagtgttact
agagctgctgagctgaacaagttgcttgtggagtgtaactttccatcaatttgcattcac
tctggcatgtcgcaagaagaaagattgacccgatacaagggattcaaggagggacataag
aggattcttgtagcaactgatttggtaggaagaggaattgatatagaacgagttaatatt
gtgatcaactatgatatgccagattctgcagatacttatcttcaccgggtgggtagagct
gggaggtttggcaccaaagggctggccatcacgtttgtgtcttctgcctctgattcagat
gttctaaatcaggtacaggagaggtttgaagttgatattaaagaactacctgaacagatt
gatacttccacatatatgccatcataa
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