Salvia splendens (scarlet sage): 121809714
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Entry
121809714 CDS
T07627
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121809714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121809714
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121809714
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121809714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
FtsK_SpoIIIE
SRPRB
ATP_bind_1
AAA_29
Motif
Other DBs
NCBI-GeneID:
121809714
NCBI-ProteinID:
XP_042066415
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All DBs
Position
6:6308312..6311765
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AA seq
438 aa
AA seq
DB search
MAYGGPAVAQTAPPGSSETVRQVKLDKECELRVEVGPNFPLRLRLLTGTAEIFGSEIPPE
IRLTFPPGHKFAVFTWYGATIEIDGITETDYTADETPMISYINVHALLDARRNRAKDSPS
DSDDSQGPRIIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATP
IELPIDPVEGIPLDMPLVYFHGHVTPSANVELYKVLVKELAQVLEKQFAGNVESRAAGMV
INTMGWIEGVGYELLLHAIDTFNASVVLVLGQEKLWSMLRDVLKSKPNVDVVKLQKSGGV
VSRNAKVRQKARGSRIREYFYGPANDLSPHSNTANFSDLLIYRIGGGPQAPRSALPVGAE
PVSDRLRVAPVSVNQDLHHLVLAVSFAKEPDEIMSSNVAGFIWVTDINFESKKITYLAPS
AGSLPGKYLIVGNLTWCE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggcggccccgccgttgctcagaccgcgccgccaggtagctcggaaacagtg
aggcaggtgaagcttgataaagaatgtgagttgagagttgaagtcggccccaattttccc
cttcgcctccggttgctcaccggcaccgccgagattttcggctcggagattccgcccgag
attcgcctcacgtttcctcccggtcacaaatttgctgtttttacctggtatggagctaca
attgaaattgatggcattactgaaactgattatacagctgatgagacccccatgatcagc
tatatcaatgtgcatgccttgctggatgctagaagaaatcgtgctaaggattcacccagt
gattctgatgattctcaggggccaaggattattgtcgtggggcctactgattctggaaag
agtacattgtcaagaatgcttctaagctgggcagctaaacagggatggaaacctaccttt
gtagatttagacataggccaaggatctataacaattcctggatgtatagctgcaactcca
attgagcttcctattgatccagtggagggcattcctcttgatatgcctctagtttacttc
catggccatgtaacccctagtgccaacgtagagttgtacaaggtattggtgaaggagctt
gctcaagttttggagaagcagtttgctggaaatgttgaatctagagctgcaggcatggtg
attaataccatggggtggattgagggtgttggttatgagttactgctgcatgcaattgat
acgttcaacgcctcagttgtattggttttgggccaggaaaagctttggagcatgcttaga
gatgttttgaaaagtaaacctaatgtagatgtggtgaagcttcagaagtcaggcggtgtt
gtctcgagaaatgcaaaagtccgtcagaaggccaggggctctaggatacgtgagtacttc
tatggccctgcgaatgatctttcccctcattctaacacagccaatttcagtgatttgtta
atctatcgtattggtggtggaccccaagcccctcgctctgctctgccagttggcgcagaa
ccagtctctgatcgcttaagagtggctcctgttagtgtaaaccaagacttgcaccatctt
gtattagctgtctcgtttgctaaagaaccagacgaaatcatgtccagtaatgttgctggc
ttcatctgggtcactgatatcaacttcgaaagcaagaaaatcacgtacctagcgccctct
gctggaagccttcccggtaaatatttgatcgtgggaaatctaacgtggtgcgaatag
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