KEGG   Salvia splendens (scarlet sage): 121809852
Entry
121809852         CDS       T07627                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121809852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sspl03019]
    121809852
Messenger RNA biogenesis [BR:sspl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     121809852
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_HPS5 WD40_RFWD3 Ge1_WD40 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Cytochrom_D1 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 Tricorn_2nd Beta-prop_pof12 WDR54 PROPPIN WD40_like CFAP43_N RMC1_N
Other DBs
NCBI-GeneID: 121809852
NCBI-ProteinID: XP_042066609
LinkDB
Position
6:13475928..13478674
AA seq 323 aa
MKLAPLNTVQNAHDDSIWAAAWVPPTDDSGPLLLTGSLDETVRLWNSNGPDKLQTNTGHC
LGVVSVAAHPSGRIAASASIDSFIRVFDVATNNTIATLEAPPSEVWQLQFNPQGTTLAAA
GGGSASVKLWDTAEWKLIATLEAPRPEGLKPSERSGSKKFALSVAWSPDGRQVASGAMDG
TISVFDVPRAKFLHHLEGHCMPVRSLVYSSAPLDSRVLFSASDDGHVHVYDAERKTLITS
LSGHSSWVLSVDVSPDGAAIATGSSDKSVRLWDLKMRAATQILTSHTDQVWAVAFGPTLQ
TDVRSCLLASVSDDKSVSFYKYS
NT seq 972 nt   +upstreamnt  +downstreamnt
atgaaactagctccgttgaacaccgtgcagaatgcccacgacgattccatctgggcggcg
gcctgggtgccgcccaccgacgattccgggccgctgctgctgacgggctctcttgacgag
actgtcaggctgtggaactccaatggccccgacaagttgcagaccaacaccggacattgc
ctcggcgtcgtctccgtcgccgcccacccatccggccggatcgccgcttccgcctccatc
gacagctttattcgagtctttgatgtcgccaccaacaacaccatcgccaccctcgaggct
ccgccctctgaagtctggcaattgcaattcaatccccagggtacaacactagcagcagct
ggaggtggtagtgcatcagtgaaactgtgggataccgcagaatggaagctgattgccaca
ctagaagctcctcgacccgaaggattgaagccatcagagagaagtgggagcaagaagttt
gctctgtccgtagcatggagccccgatggtagacaagttgcatctggtgcaatggatgga
accatctctgtctttgacgtgccccgtgccaaattcttgcaccacttggaaggccactgc
atgcccgtcagaagtcttgtgtactcatcagctcctcttgattcaagagtgctcttctct
gcttcagacgacggtcatgttcatgtctatgatgccgagaggaaaaccttgatcacgtcg
ctgtcaggccactctagctgggtgctgagtgtggatgtatccccagacggagcagcaata
gcaacaggctcaagtgacaaaagcgttcgcctatgggatctgaagatgagagcggccacc
cagatactgactagccacactgaccaggtttgggcagtggcatttggaccaacgttgcag
acagatgtaagatcttgcctgcttgctagcgtgtctgatgacaagagcgtatcgttctat
aaatattcttga

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