Salvia splendens (scarlet sage): 121811048
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Entry
121811048 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121811048 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121811048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sspl03000
]
121811048
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121811048
04121 Ubiquitin system [BR:
sspl04121
]
121811048
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121811048
Transcription factors [BR:
sspl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121811048
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121811048
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121811048
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121811048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Blt1_C
zf-RING_2
FYVE
Motif
Other DBs
NCBI-GeneID:
121811048
NCBI-ProteinID:
XP_042067748
LinkDB
All DBs
Position
7:8444183..8452754
Genome browser
AA seq
1001 aa
AA seq
DB search
MPTMSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACR
TAYNKEKIVGTTAKCERLVSEMSVEKKVKSQKGKSKGLEGRKQLGSVRVIQRNLVYVVGL
PLHFADDDLLQRREYFGQYGKVLKVSISRTATGTIQQFANSTCSVYITYSKEEEAVRCIQ
LVHGFALDGKPLRACFGTTKYCHAWLRNMPCSNPDCLYLHDIGSQDDSFTKDEVISEHTR
SRIQQVTSSSISIQRRSGNVLPPPGDDYCNNNSSTSSVKPLAKTAINTNNSVMCTRNSPP
SSSSGISTALPAGASWGVRPSGNQLLLTSTSSSSRPSNQKNDMCSGPAAFSKSAPSQVSS
LQNDTGKKRVPNEGSSISLEKSNTETSGPVKKEANRDGSIVSDTSSTPAYTTSVPLSSQL
HSPPRTRSILNTSNIVDSSASSNGLVSDKDPKDYIDNNMENVYSDVLSLSIQENQHSQNN
NVEQIRESSVCETSGEVKSTTDVVHVASVQSDSRLGRPDEETKTDLPELNNDLLSFHSQR
IKDPEIASSITPEFFDALNLKRSNFISPAFDNANGLTGIGFDSQAVHRSGNLMVSNSNSP
SVYLENTFNNGAENSNLSLRKEKMSQLARYETEVGSGVPAIDTGESSIISNILSLDFDSW
DESVSSPQNLAKLIGETDRRQGSFGAPGSWKTQNSSQSRFSFAREEEAMSHFPEQSIDYH
EQALKQHLFGHNFSGSNRFHVEKFVSTNGLPVSSGTEQDYFANNVSHYSSNKLPISRPHV
SAPPGFSAPSRAAAPPGFTSHARTEQFFESHSGHAVEATSLLRNQYQTPPSGDTYSNGDI
EFMDPAILAVGKGTFASGINNMGLDIRSNFSPQFNAYDEARFQSILQRSFPPHHNQRFSD
LGDNLSTLGDTHGIPSRVAEQTLTNNHSPFSQFNLQQYRNGATSNGQWDGWNESQSMNNL
SIDELLRAERLRLSSNLYGGYEESKMRMPGSSNIYNGAYGI
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccatgagcgacgaaggagagaagacttgccccctctgtgctgaggagatggat
ttaactgatcagcagttgaagccttgcaagtgtggctatgagatttgtgtttggtgttgg
catcatattatggatatggctgagaaagatgagactgaagggcgctgtccagcatgtcgt
actgcttataacaaagaaaagattgttggaacaactgcaaaatgtgaaagattggtgtca
gagatgagtgtggagaaaaaggtaaagtcacagaagggaaagagcaaaggcttggaagga
cggaagcaacttggcagtgtacgagtcattcagaggaatcttgtgtatgttgtgggtctg
ccactgcattttgctgatgatgatctacttcagcgcagagaatattttggtcagtatggg
aaggtgctgaaggtgtcaatatctcgaacagcgactgggactatacaacagtttgcaaat
agtacatgcagtgtatatataacatattcaaaggaggaggaggcagtccgatgtattcag
ctggtacatggatttgctctggatggtaaaccattgagggcatgctttgggaccacaaaa
tactgtcatgcatggctgagaaatatgccttgcagcaacccagattgtctgtatttgcat
gacattggctcacaagatgatagttttacgaaggatgaagtcatatctgaacacacaagg
agtagaatccaacaagtcaccagttcctcaattagtatccaacggcgttcaggaaacgta
ttacctcctccaggagatgattactgcaataataacagctcgacgtcttcggtgaagcct
cttgctaaaactgctattaatacaaataattcagtaatgtgtactagaaattctccacca
agtagtagctcagggatatctactgctctaccagctggagcatcatggggtgtacgtcca
tctggtaatcaacttttgctgacaagcacatcgagttccagcagaccatctaatcagaaa
aatgacatgtgtagtggtccagcagcattttctaaatcagccccaagtcaagtttcttca
cttcagaatgacactgggaagaaaagggtgcccaatgaaggaagcagcatttctctcgag
aaaagtaacacagaaacttctgggccagtaaagaaagaagcaaatagagatggaagtatt
gtttctgacacttcctcgacacctgcatacaccaccagtgtgcccttgagcagccagctt
catagcccacctagaacgagatcaattctaaatacttctaatatagttgattcttctgct
tcatctaacggacttgtatcagataaagatcctaaggactacatagacaataacatggag
aatgtgtactctgatgtattatcattgagcattcaagaaaatcaacattcgcaaaataac
aatgttgagcaaattagagaatcatcagtttgtgagacttctggagaagttaagagtacc
actgatgtggtacacgttgcaagtgtccagtctgattctagattgggaaggcctgatgaa
gaaactaaaaccgacttgcctgaactgaacaatgatttgttatcttttcatagccagagg
attaaggatcctgagattgcttccagtataacaccagagttttttgatgcacttaatcta
aagcgttctaattttatttctcctgcattcgacaatgctaatggtttaaccggcattggt
tttgatagccaggctgtacatagaagtggtaacttgatggtatcaaattctaattctcca
agtgtgtatctggagaatacattcaataatggtgctgaaaattccaatttgtctctcaga
aaagagaaaatgtctcagcttgcgagatatgaaactgaagtaggcagtggtgtgcctgct
attgatacaggggagagcagcatcatatcaaatattttgtcactggactttgactcatgg
gatgagtctgtaagttcacctcagaacctggctaagttgataggtgaaactgatagacgg
caggggtcttttggagcaccaggttcctggaaaactcagaatagcagtcaatcaagattt
tcatttgctagagaggaggaagctatgagccattttcctgaacaatctattgattaccat
gaacaagccttgaagcagcatctttttggccataatttctcaggcagcaacagattccat
gttgagaagtttgttagtacaaatggtttacctgtttccagtggcacagaacaagattat
tttgctaacaacgtttctcattattcttccaacaagcttcctatttcaaggcctcatgta
tctgcacctccaggattttcagcgcctagtagggcagcagcacctccaggctttacttct
cacgcacggacagagcaattttttgaatcacactctggtcatgcagttgaggctacctct
ttattaagaaatcagtatcaaacacccccaagtggtgatacttattctaatggtgatata
gaatttatggatcctgcaattttggctgttggcaaagggacatttgcaagtggcatcaac
aatatgggcctagacataagatccaatttttctccacagttcaatgcatatgatgaggcc
agattccaatcaattttacaaagatcttttcctccacatcacaaccaaagatttagtgac
ctgggcgacaatctttctacccttggtgatactcatggaattccttctagggttgccgag
cagacactaaccaataatcactctccattttcccaattcaaccttcagcagtatagaaat
ggagcaacttctaatggtcaatgggatgggtggaatgaatcccagagtatgaataatttg
agtatagatgaactgctcagagccgagaggttgagacttagcagcaatttatacggtggc
tatgaagaatccaagatgaggatgccaggttctagcaatatatacaatggagcttatggg
atttga
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