Salvia splendens (scarlet sage): 121811241
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Entry
121811241 CDS
T07627
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121811241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121811241
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121811241
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121811241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121811241
NCBI-ProteinID:
XP_042067994
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All DBs
Position
7:8639260..8645204
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AA seq
662 aa
AA seq
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MSGLLNSSLNGSTSSLPDSTGRSYTPSFSVQSGAGSPVYHHAGNIQGLHNLHGNFNVPNM
PGALGSRSTTMNNIASSGLQQASGNLSTGRFSSNNLPVALSQISHSNTHVHSGMASRGGM
SVIGNQGYSSSTNGVGGSIPGILPTSAAISNRTSVSGLGISPVLGNAGQRMASSMGSIVG
GGSIGRNISSGGGLSMPGLTSRLNLSANSGSGNLNVQGQNRLMSGVLQQASPQVLSMFGN
SYPSAGGPLSQNHVQSVNNLTGMSMFGDMNSNDGAPFDINDFPQLNSRPSSSGGHGQIGS
LRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGSIDYSMDMHQKEQIHDSSVSMMQPQNFS
MGRSSGFNLGATYSPHRPQQQQQHTQSASGSGGPFSNVNNQDLLHVHSSELFPPSHSNYH
SQSSGPPGIGLRPLNSPSSVSGMGSYEHLQQYQQHPNQSQFRLQPMSAVGHPFRDQGAKP
MQAAQTASDPFGLRGLLSVIRMSDPDLSSLALGIDLTTLGLNLNSTENLHKTFGSPWSDE
PAKGDTEYAVPQCYYAKQPPPLSQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRAW
FYHREIHYWFTRVSNMEPLVKTSAYERGSYICFDPNTWETIRKDNFVLHYDMLEKRPALP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttgctcaattcatcactgaacggttctacttcaagtcttcctgacagcact
gggcgttcatacacaccatcattttctgtacagtcgggtgctggttctcctgtttatcac
catgctggaaatatccagggactgcataatcttcatggaaacttcaatgttccaaacatg
ccgggtgcgcttggatcaagaagtacaactatgaataacattgcttcaagtgggttgcaa
caagcttctggcaacctttctactggtcgtttttcttccaacaaccttccagttgctctt
tctcagatatctcacagcaatacgcatgttcattcagggatggcaagcaggggtggtatg
agtgtcataggaaaccaaggatatagtagcagcactaatggagttggtggttctatccca
gggatcctaccaacatctgctgcaattagcaatcggacatctgtttccggtcttggtata
tctccggtcctaggaaatgcagggcaacgaatggcaagttcaatgggtagtatagttggt
gggggcagcattggccggaatattagctcaggtggagggctatctatgcctgggcttact
tctcgattgaatttatcagccaacagcggttccggaaatttaaacgtgcaaggacaaaat
aggctgatgagtggtgtgcttcaacaagcttctccacaggtactgtcaatgtttggcaat
tcctatccttctgctggtggtcctctatctcaaaaccatgttcagtccgtaaataatctt
acgggtatgagcatgttcggtgatatgaattccaatgatggtgctccttttgatattaat
gatttccctcagctgaatagtcgtcccagttcatctggaggccatgggcaaattggttcg
ttgcgaaagcaaggccttagtcctattgttcaacaaaatcaggagttcagtatccaaaat
gaagattttccagccttacctggatttaagggtggcagcatagattactcaatggacatg
catcagaaagaacaaattcacgatagttctgtttccatgatgcagccccaaaatttttct
atgggacgctcttctggtttcaacttgggtgcaacttattcaccccatcggccacaacag
cagcagcaacatactcaatcagcaagtggtagtggtgggcccttttctaatgtaaataat
caagatctgctccatgtacatagttcggagttgtttccaccatcgcattcgaactatcat
tcacagagcagtggacccccgggaattggattgcggcctctgaatagtccaagttcagta
tctggtatggggtcgtatgaacacctacaacaatatcaacagcatcccaatcaatcccaa
ttccgccttcaaccaatgtctgctgttggtcatccttttagggatcaaggagcaaagcct
atgcaggctgcccagacagcttcggatccatttggcttgcgtggtttattaagtgtgata
agaatgagtgatcctgatttgtcatctcttgcacttggaattgacctaactacacttgga
ttgaacttgaattctacggaaaatcttcataaaacgtttggttccccatggtctgacgag
cctgcaaagggtgatactgaatatgctgtgccacaatgttattatgccaaacaaccacca
cctttaagtcaagcatacttctcaaagttccaattagacacgctgttctacattttttat
agtatgccaaaggatgaagctcaattgtatgcggcaaatgagttatataatagagcctgg
ttctatcatcgggagatacactattggtttacaagagttagcaacatggagcctcttgtg
aagacaagtgcttacgagagaggttcttatatctgttttgatccaaacacatgggagaca
attcgaaaggataattttgttcttcattatgacatgttggaaaagagaccagctctgcct
caacattga
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