Salvia splendens (scarlet sage): 121811307
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Entry
121811307 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121811307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121811307
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121811307
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 related factors
121811307
Complex B
121811307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
Motif
Other DBs
NCBI-GeneID:
121811307
NCBI-ProteinID:
XP_042068081
LinkDB
All DBs
Position
1:complement(8053333..8057421)
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AA seq
1126 aa
AA seq
DB search
MEEPKSKSRRDGSETDEVKASHHREDRKREKERNGERYKDRDRDSRHEREKSVDDKYRDK
ENKREQERNGERHKNRGRNRDRDSRHEREKSVDDKYRDKEKHKSKRHDKEQEQERGRNHD
DERPRDKAKGREREKEKERERREKTRDRERERKERERKHEKEKRRDRDRSHSSDDDVKDH
ERKRHKKEEDHQTRDLEQNSKANRHRDDNEDNSSRKKGNVDSEDKKEKSWEQDLAEEQQR
LDDEMEKRRRRVQEWQELRRKKEESEIEKHGVPVAHEPESGKTWTLEGESDDEEAGPQER
ETMDVDEDEDATMKPVAEDMSVDSANEAAPSMQSVGDNAVDDEEIDPLDAFMNSMVLPEV
EKLNNTVPSASNDSGPELVEKNGKVNSENTKKGKNRYMGRIIPGDNSDSDYGEVENEEDP
SEEEDDEEFMKRVKKTKVEKLSIVDHSKIDYPPFRKNFYIEVKEISKMTSEEVAAHRKQL
ELKIHGKDVPKPVKAWHHTGLATKILDTIKKLNYEKPMPIQAQALPVIMSGRDCIGIAKT
GSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHSDIKKFTKAFGLSCVP
VYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG
FEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVELQVGGRSVVNKDITQLVE
VRPESDRFLRLLELLGEWYEKGKILIFVHTQEKCDALFKDLLKSGYPCVSLHGGKDQTDR
ESTLADFKSNVCNILIATSIAARGLDVKDLELVVNFDVPNHYEDYVHRVGRTGRAGKKGC
AITFISEEDARYGPDLVKALELSEQSVPEDLKALADGFMAKVNQGLEQAHGTGYGGTGFK
FNEEEDEARRAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISHQAALAQALASATKAS
AAASVTAPMTSGQLIQNGGVAASAVIPGGGLPTGGNDAAAKAAALAALMNLQHNLAKIQA
DAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYYPLGKIAGPGERK
LYLFIEGPTEQSVKRAKADLKRVLEEITNQASSLPGSAQPGRYSVV
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaccgaaaagcaagtctagaagggatggctctgaaacagacgaagtgaaagca
agtcaccatagagaggatcgtaagcgtgaaaaagagaggaatggggagaggtacaaggac
agggaccgtgacagtcgccacgagagagagaagagtgttgatgacaagtacagggacaaa
gaaaataaacgtgaacaggagcggaatggggaaaggcacaagaacaggggcaggaacaga
gatcgtgatagtcgccacgagagagagaagagtgttgatgacaagtacagggacaaagaa
aaacacaagtctaagcgccatgacaaggaacaagaacaggagagaggaaggaaccatgat
gatgagaggcccagggacaaggctaaaggcagagagagggagaaagagaaggagagggag
agaagggaaaagaccagggacagagagagagaaaggaaagagagggagaggaaacatgaa
aaggaaaaacgccgagacagggataggtcacatagtagtgatgatgatgttaaggaccat
gagaggaaaaggcacaagaaagaggaggatcatcaaactagggatttagaacaaaatagt
aaggccaaccggcatagggatgacaacgaagacaatagttcacggaagaagggaaatgta
gattcagaagataagaaggaaaagagttgggaacaagatttagctgaagagcaacagaga
ttggacgatgagatggaaaaaaggagaagaagagttcaggagtggcaagagctgagaagg
aagaaggaggaatcggagatagaaaaacatggggtgcctgttgctcatgaacctgaatcg
ggaaagacttggacactggaaggggaatctgatgatgaagaagctggtccgcaggaaaga
gaaacgatggatgtagatgaggacgaggatgcaactatgaagcctgttgcggaggacatg
tctgtagactctgcaaatgaggcagctccttccatgcaaagtgttggagacaatgctgtt
gatgatgaagaaattgaccccttagatgcgtttatgaattctatggttttgcctgaagtt
gagaaactaaacaatactgtgccgtctgcttcaaatgactctggtcctgaattagttgaa
aaaaatggtaaagtgaactccgagaacactaaaaaggggaagaacagatatatgggcaga
attattcctggagataactctgattcagactacggagaagttgaaaatgaggaagatcct
tcagaggaggaagatgatgaagaattcatgaaacgggtgaagaaaaccaaagtggagaag
ctttcaatagttgaccattcgaagattgattatccccccttccgtaagaatttctacatt
gaagtgaaagaaatttcaaagatgacttctgaagaagtggctgcacataggaaacaactc
gaattgaagatacatggaaaggacgtgcctaaaccagtcaaagcctggcaccatacagga
ttggctactaaaattttggatactattaagaagctcaattatgagaagccaatgccgatt
caagcgcaagccttgcccgtaattatgagtggtcgggactgcataggtattgcaaaaact
ggatctgggaaaaccttggcctttgtcctgcccatgctgcggcacattaaggatcagcct
cctctgatgtcaggtgatgggcctatcgggcttattatggctccgacaagggagcttgtc
cagcaaatccatagtgatataaagaaattcacaaaggctttcggcctcagctgtgtgcct
gtatatggaggttctggggttgctcagcagattagtgaactgaagcgaggggctgagatt
gttgtttgcaccccgggtagaatgattgatatattatgtactagtggtggtaaaattact
aatctgcgtcgtgtcacttacttggtcatggacgaggctgatcggatgtttgatatgggt
tttgagcctcaaataacaagaatagtccaaaatacaagacctgatcggcaaactgtgcta
ttttctgctactttccctcgccaagttgagattttggctcgtaaagtattgaataaacct
gttgaacttcaggtaggtggtaggagtgttgtgaacaaggacattacccaactagttgag
gttaggcctgagagtgataggttccttagactcttggaactacttggagaatggtatgag
aaggggaagatactaatttttgtccatactcaagagaagtgcgatgcactgtttaaggat
ttacttaaatctggatatccgtgtgtgtcacttcatgggggaaaggatcaaacagatcgt
gaatccacattagctgattttaagagtaatgtttgcaatatattgattgccacaagtatt
gctgctagaggtttagatgtcaaagatctagaactagtcgttaattttgatgtccctaac
cattacgaagactatgtccatcgtgttggtagaactggccgagctggtaaaaaggggtgt
gctatcacatttatctcagaggaagatgcgagatacggacctgatctagtgaaagcctta
gaattatccgaacagagtgtccccgaagacctcaaggccttagctgatggcttcatggcc
aaggtgaatcaagggcttgaacaagcccatgggactggctacggtggtactggtttcaaa
tttaacgaagaggaggatgaagccaggcgagccgcaaagaaagctcaggcgaaggagtat
ggttttgaggaggataaatcagattcggacgatgaagatgaagggattagaaaagcaggt
ggcgacatatctcaccaagctgcacttgctcaagctttggcttctgctaccaaagcaagt
gctgctgcttcagtaacggcgcccatgacgtctgggcagctcattcaaaatggtggcgtt
gcggcatctgctgtaatacccggaggtgggcttccgacgggtggaaatgatgcagcagcc
aaagcagcagctctggcagcgcttatgaatctgcagcataacttggcaaagattcaggca
gacgcgatgcctgaacactatgaagcagagctggagataaatgacttccctcagaacgcc
cgttggaaggtgacacacaaggaaaccctgggtccgatatcggaatggacaggagcagcc
atcacgactcgaggccagtactacccgctggggaagattgcagggccgggagagaggaaa
ctgtacttgtttattgagggcccgacggagcaatctgtcaaaagggcaaaggcagatctc
aagagggtcttggaggagatcactaaccaagcttcatcccttccaggctcagcgcaacct
ggccgatactctgttgtctag
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