Salvia splendens (scarlet sage): 121811492
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Entry
121811492 CDS
T07627
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121811492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121811492
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121811492
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121811492
Messenger RNA biogenesis [BR:
sspl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
121811492
DNA repair and recombination proteins [BR:
sspl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
121811492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
121811492
NCBI-ProteinID:
XP_042068300
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All DBs
Position
7:complement(9515305..9524501)
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AA seq
909 aa
AA seq
DB search
MQGPSMESTLKKFFGFSTFRPYQKEIVDSILQGRDCLVVMATGSGKSLCYQVPPLILNKT
AVVISPLISLMQDQVMALKERDIRAEYLSSAQNDPNALTNAERGLYDILYMTPEKACMLP
SSFWSRLLDYGICLLAVDEAHCISEWGHNFRVEFKQLDKLRDVLLNVPFVGLTATATGKV
RDDIVKSLKLQSPYITIGSFDRQNLFYSCQSFVRGSAFLNELVSEISTCAAKTESTIIYC
TTVKDVEEVFASLMESRVQAGMYHGQMSNKAREDYHRSFIRDEFYIMVATIAFGMGIDKP
DIRHVIHYGCPKSLESYYQESGRCGRDGIPSNCRLYYTRSDFGKGDFYCSEARTADQREA
IMDSFAAAQRYCMVTTCRRNFLLGYFGETYPSSRCGTCDNCTSSKKEIDMSREAFLLMAC
IQSCGGHWGLNLPIDVLRGSRSKKILDARFDKIPFHGLGKDMSANWWKALASQLIAQDYL
VETFKDIYKSIRVGTKGNQFLTSCNPDYQPPLYIALTPELAGEDAIKDGTGNGIVDNSGQ
VSNGLSQAEDKLYKKLLEERMKLAKAHRTAPYALCGDQTLRRITLTRPSTRARLANIDGV
NQHFLNTYGDRLLQSIRQLSQEEGLNLDGEPSVESPMQTKVATIHRKRNLSPAKFEAWKM
WQEDGLTAQKIANHPSRAAPIKEETVLMYIIEAGREGCPIDWARLCLEVGLTQETFSNIQ
EAVSKVGTNLKPIKNELPEEVTYIQIKVGLLMQEMQISTEVIASTHQQSCEVDNFKKETS
ELLGGSTSLTSKTEGTQSNTAPLADSGDHQMKVDSAMNDNSTGKSENADDFTCSRKRLKL
DEAQAVQSVALEATEDSVLDWLKNFKDGVLLSDIVEHFSGSREESVINVLNCLESEFFIF
KKKNLYHLM
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtccatcaatggagtccactctcaaaaaattcttcggattctccacattccga
ccttaccagaaagaaattgtggacagtatcctgcaaggtagagattgcttagtggttatg
gcgaccggaagtggcaagtcattgtgctatcaggtgcctcctctaatactgaataagact
gctgtagtcataagcccgctcatatccttgatgcaggatcaggtcatggccctgaaggaa
agggatatacgagcagagtatctttctagtgctcagaatgatccaaatgccctaactaat
gctgagagaggtctgtatgatattctgtatatgacaccagagaaggcctgcatgcttccg
agcagtttctggtcaagattactggattatggaatttgcttattagctgttgatgaagca
cattgcatatcagagtggggacataacttcagggtggaattcaaacaattagataaactg
cgtgatgttcttttgaatgtaccatttgttggattgacagctaccgctactggaaaggtt
cgtgatgatatcgtgaagtcattgaagttgcaatctccgtatataaccattggctcattc
gaccgccagaatctcttctacagttgtcaatcttttgtccggggcagtgcttttctgaac
gaacttgtgtcagaaatctctacgtgtgctgctaaaacagaatcaactataatatactgc
accacagtcaaagatgtggaagaggtctttgcgagccttatggaatcaagagttcaggcc
ggaatgtaccatggacagatgtctaataaagcacgcgaggactaccacagatccttcatc
agagatgagttttatataatggttgcaactatagcttttggcatgggcattgacaagcct
gatataagacatgtaatacactatggctgcccaaagagtttggaatcatattatcaggag
agtgggcgttgtggtagagatgggattccttcaaactgccggctatattacacaagaagt
gactttggcaagggtgatttttattgttctgaagcacgcacagcagaccaaagagaagca
ataatggattcatttgctgcagcgcaacgttattgcatggtgacaacttgcagaagaaat
ttcctcttaggatactttggagagacatacccatcgtctcgctgtgggacttgtgataat
tgcaccagctcaaaaaaagagattgatatgtctagagaggcatttcttcttatggcttgc
attcaatcatgtgggggacattggggtctcaatttgcctattgatgtacttcgcggatcc
agatccaagaaaattcttgatgctcgttttgataagattccgttccatggtttaggaaaa
gatatgtcagctaattggtggaaggcactagcttctcaattaattgcacaagattatttg
gtcgaaaccttcaaagatatatacaaaagtataagagttggaacaaaaggaaatcagttt
ttgacttcctgcaaccctgattatcaacctccattatatatagcactgactccagaattg
gcgggtgaggatgcgatcaaagatggaactggtaatgggattgttgacaattcgggtcag
gtttcgaatggattatcccaggctgaggataagctctacaaaaagcttttggaagagaga
atgaaacttgcaaaagcacacagaactgctccgtatgcattatgtggtgatcaaacatta
agaaggattacattgacaaggccttcaacaagagctaggctagcaaatattgatggtgtg
aatcagcactttttaaatacatatggagatcgtttactgcaaagcattaggcagctatcc
caagaagagggtcttaatttggatggggagccaagtgtagaatctccaatgcaaactaag
gttgcgacaattcacaggaaaagaaacttatcaccagcaaagttcgaagcttggaaaatg
tggcaagaggatggccttacagcccaaaaaattgctaatcatcctagtagagcagctcca
ataaaagaagaaacagtcttgatgtatataattgaagccggaagagagggatgtcctatt
gactgggccagattatgtcttgaggttggactgacacaggagacattcagcaacattcag
gaagccgtttcaaaagttgggacaaatttaaaacctataaaaaacgagttacctgaagag
gtgacctacattcaaataaaggttggcttgctgatgcaagagatgcaaatatcgactgaa
gtaattgcatctacccatcagcaaagctgtgaagtagacaacttcaagaaagagacatca
gaactcttgggaggatccaccagccttacatccaagactgaaggcactcagtccaatact
gcgccattggctgacagtggggatcatcagatgaaagttgacagcgcgatgaatgataac
tcaactggaaaatctgagaatgcagatgacttcacttgctctaggaaacgcttgaaactt
gacgaagcacaagcagtgcagtctgttgctttggaagcaacagaggattctgtacttgac
tggctcaagaacttcaaagatggggttctgctttcggatattgtggagcatttcagtgga
tcgagagaagagtcggtgatcaatgtcctaaattgtctcgagagtgagttttttatattc
aagaagaaaaatctctaccatcttatgtaa
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