Streptomyces spinosirectus: LXH13_17445
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Entry
LXH13_17445 CDS
T08958
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sspn
Streptomyces spinosirectus
Pathway
sspn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sspn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LXH13_17445 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspn03021
]
LXH13_17445 (rpoB)
03400 DNA repair and recombination proteins [BR:
sspn03400
]
LXH13_17445 (rpoB)
Enzymes [BR:
sspn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LXH13_17445 (rpoB)
Transcription machinery [BR:
sspn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LXH13_17445 (rpoB)
DNA repair and recombination proteins [BR:
sspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LXH13_17445 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UIR18723
LinkDB
All DBs
Position
complement(3791692..3795177)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNTAWQSRVEE
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADAPLDAGILTVEDIISTIKYLVKLHAGEIETTADNGQTIVVETDDIDHFG
NRRLRSVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRKVVDGQVTDEVDYLTADEEDRFVIAQANATLTDDLRF
AENRVLVRRRGGEVDYVAGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSEAPLVGTGMEYRSAVDAGDVVKAEKAGVVQEVSADYITTANDDGTYITYRLAK
FARSNQGTSVNQKVIVSEGDRLVEGQVLADGPATQEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVIAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLSEEWAQRLQAIGADQVDPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaatgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcttttgcaaagatcaaggagcctctcgaggttcccaacctgctcgcgctg
cagaccgagagctttgactggctgctcggcaacaccgcctggcagagtcgggtcgaggag
gctctggaatccggtcaggatgtccccaccaagtccggcctcgaagagatcttcgaggag
atctccccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgtttc
gagccgccgaagaactcgatcgacgagtgcaaggagcgcgacttcacgtacgcggctccg
ctcttcgtcacggccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtggtgtcgcagctggtccgttcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgcgaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtcaccgtgctcctgaaggctctcggttggacgaccgagcagatcctcgaggagttc
ggcgagtacgagtcgatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccccccacgcgtgaggccgcg
cagacgctgctcgagaacctctacttcaaccccaagcgctacgacctcgccaaggtcggc
cgctacaaggtcaacaagaagctgggtgcggacgctccgctggacgcgggcatcctgacc
gtcgaggacatcatctcgacgatcaagtacctggtgaagctgcacgccggcgagatcgag
acgaccgccgacaacggccagacgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgtctgcgcagcgtcggcgagctcatccagaaccaggtccgtacgggcctggcg
cgtatggagcgagtcgtccgcgagcgcatgacgacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctcacccacaagcgccgc
ctgtcggctcttggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcctacggccgggtcaacgcgttcggtttcgtcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcaccgacgaggtcgactacctgaccgccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgccacgctgacggacgacctgcgcttc
gccgagaaccgcgtcctggtccgccgccgtggcggcgaggtcgactacgtcgccggtgac
gacgtggactacatggacgtctccccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctggagcacgacgacgccaaccgtgccctgatgggcgcgaacatgatgcgtcag
gccgtgccgctcatcaagagcgaggccccgctcgtcggcaccggcatggagtaccgctcc
gcggtcgacgccggcgacgtggtcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacatcaccaccgccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttcgcccgctccaaccagggcacctcggtcaaccagaaggtcatcgtcagcgagggcgac
cgcctcgtcgagggccaggtcctcgccgacggtcccgccacgcaggagggcgagatggcc
ctcggcaagaacctgctggtcgcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcatcgccggcgacatcctcgtcggcaaggtgacccccaagggcgagaccgagctg
acccccgaggagcgcctgctgcgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggtgtgcgcgtcttcgac
cgcgaggagggcgacgagcttccacccggtgtgaaccagctggtgcgcgtgtacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccggcacggcaacaagggcgtc
atctccaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcagcgaggagtgggcg
cagcgcctgcaggcgatcggcgccgaccaggtcgacccgggcacgaacgtcgcgaccccc
gtcttcgacggtgcgcgcgaggacgagctcgcgggtctgctgcagcacaccatcccgaac
cgggacggcgagcgcatggtgctcccgtccggcaaggcgcggctgttcgacggccgcagc
ggtgagccgttcccggagccgatctcggtcggctacatgtacatcctcaagctccaccac
cttgtcgacgacaagctgcacgcccgctccaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggcggccagcggttcggcgagatggaggtgtgggcg
ctggaggcctacggcgccgcctacgccctccaggagctgctgaccatcaagtccgacgac
gtgaccggccgcgtgaaggtgtacgaggccatcgtcaagggcgagaacatccccgagccc
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtcgctctgcctgaacgtg
gaggtgctgtccagcgacggtatgtccatcgagatgcgtgacaccgacgaggacgtcttc
cgcgctgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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