Streptomyces spinosirectus: LXH13_26355
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Entry
LXH13_26355 CDS
T08958
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sspn
Streptomyces spinosirectus
Pathway
sspn03420
Nucleotide excision repair
sspn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LXH13_26355
03430 Mismatch repair
LXH13_26355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspn03400
]
LXH13_26355
Enzymes [BR:
sspn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LXH13_26355
DNA repair and recombination proteins [BR:
sspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LXH13_26355
MMR (mismatch excision repair)
Other MMR factors
LXH13_26355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UIR20338
LinkDB
All DBs
Position
5686966..5690655
Genome browser
AA seq
1229 aa
AA seq
DB search
MPPRITDPDQLKELLGIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAGELAERVRKALIKAGVTDPDVIDPDNPPGEPVISTYHAFAGRLL
TDHGLRIGLEPTARLLADATRYQLAARVLREAPGPYPGLTRSFADLVSDLLTLDAELSEH
LVAPAEVRAYDSELLRTLEGVRLSNDALRQVPKAAAARRELADLVVRYRAAKRERDLLDF
GDQIALSAQLAQITEVGRTLRDEFRVVLLDEYQDTSVAQRILLAGLFGGGTGHPVTAVGD
PCQAIYGWRGASVANLDDFPEHFAHPDGRPATRQALSENRRSGGRLLDLANGLAEPLRAM
HAGVEALRPAPGAERDGTVRCALLATHAEEIEWLADSVSHLVNTGKAPGEIAVLCRTATD
FAEIQGALVARDVPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIG
PRDLALLGRRARLLVSHARVDDDDRDRRLAEAVEGIDPSEVTSLADALDTFLEMPLDADR
EDDGLPFSPDARVRFARLAAELRDLRRSLSDPLMDVLHRVLAVTGLEVELSASPHALAAR
RRETLSNFLDIAASFAAGDQEATLLAFLAFLRTAAQYEKGLDNALPGGENTVKVLTAHKS
KGLEWDVVAVPGLVTGTFPSTQGRERWTSQGKVLPHELRGDAATLPDVDSWDSRGLKAFQ
EAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPTQKKPRGPSDFLQALYEHCEAGHGE
IEAWADEPAEDEENPALHTASAEQAWPLPLDETSLARRRAAAETVLAHLEELALHEDGHP
TATHDPDSHDDPDWPAPPDDEELPYENEPPYENEPPYEGEPPFEDDLPYDEEALYGDEPP
YEGEPPGEKPPFTDDELPSTGEAPSGWDSWSTTRPTVPHQASSPDASGTPPPEAPDPRGG
TRAYPHRPPREPARLTAQEVRLTPEEARTLASWDRDLDALTGELLRAREAVTEVPLPASL
TASQVLRLAADPDGFAQELARPMPRPPQPAARRGTRFHAWVEARFEELTLPVLEPEELPG
TDAEIADERDLEALKEAFERTEYAHRTPHRVEAPFQLAIAGRVIRGRIDAVYRESADGKG
TTYEIVDWKTGRTRSGDPLQLALYRLAWAEQQGVPLESVNAAFLYVRTGEVVRPQGLPDR
AALERLLLGEPAATANCEEPPNDDVGAGR
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
gtgccgccacgtatcaccgatcccgatcagctcaaggagctcctcgggatcccgttcacc
ccggagcagacggcctgcatcatcgcgccgcccgccccgcaggtgatcgtggccggagcc
gggtccggcaagacgaccgtgatggcggcacgcgtggtgtggctggtcggcaccggacag
gtcgctccggaacaggtcctcggactcaccttcaccaacaaggcggcgggcgaactcgcc
gagcgcgtccgcaaggcgctcatcaaggcgggcgtcaccgaccccgacgtcatcgacccg
gacaacccgccgggcgagcccgtgatctccacctaccacgccttcgcgggccgcctcctg
accgaccacggactgcgcatcggcctcgaacccaccgcgcgactgctcgccgacgccacc
cgctaccagctcgccgcgcgcgtgctgcgcgaggcgccgggcccctacccgggactcacc
cgctccttcgcggacctcgtcagcgacctgctcacgctcgacgccgaactctccgaacac
ctcgtggcaccggcagaggtgcgcgcgtacgactccgagctgctgcgcaccctcgagggc
gtcagactcagcaacgacgccctgcgacaggtgcccaaagcggccgcggcgcgccgcgaa
ctcgccgacctcgtggtccgctaccgagccgcgaaacgcgagcgcgacctgctcgacttc
ggcgaccagatcgccctgtccgcgcagctcgcgcagatcaccgaggtcggccgcaccctg
cgcgacgagttccgcgtggtcctcctcgacgagtaccaggacacctcggtggcccaacgc
atcctccttgcaggcctgttcgggggcggcaccggccacccggtcaccgccgtcggcgac
ccctgccaggccatctacggctggcgcggcgcctccgtcgccaacctggacgacttcccc
gagcacttcgcccaccccgacggccgccccgccacccggcaggcgctcagcgagaaccgc
cgcagcggcggccgcctcctcgacctggccaacggcctcgcggagccgctgcgcgccatg
cacgcgggcgtggaggccctgcggcccgcgcccggcgccgagcgcgacggcacggtgcgc
tgcgcgctgctggccacccacgccgaggagatcgagtggctcgccgactccgtctcccac
ctggtgaacaccgggaaggcgcccggtgagatcgccgtcctgtgccgcacggcgaccgac
ttcgccgagatccagggcgcgctcgtcgcccgggacgtacccgtcgaggtggtcggactg
tccgggctgctgcacctgcccgagatcgccgacctggtcgccgtctgcgaggtgttgcag
gaccccggcgccaacgcctccctggtccggctgctgaccggcccgcgctggcgcatcggc
ccgcgcgacctcgccctcctgggacgccgcgcgcgcctcctcgtcagccacgcgcgcgtg
gacgacgacgaccgggaccgccggctcgccgaggccgtcgaggggatcgacccctcggag
gtgacctcgctcgcggacgccctcgacaccttcctggagatgccgctcgacgccgaccgg
gaggacgacggactgcccttctcgccggacgcgcgcgtgcgcttcgctcgcctggccgcc
gaactgcgcgatctgcgccggtcgttgtccgacccgctgatggacgtactgcaccgcgtc
ctcgccgtgaccggcctggaggtggaactgtccgcgtccccgcacgccctggccgcacgc
cgtcgcgagaccctctccaacttcctggacatcgccgcctcgttcgccgccggcgaccaa
gaggccaccctgctcgcctttctggccttcctgcgcaccgccgcccagtacgagaagggc
ctcgacaacgccctccccggcggcgagaacaccgtcaaggtcctcaccgcgcacaagtcc
aagggcctggagtgggacgtcgtggccgtccccggactggtcaccggcaccttccccagc
acccagggccgcgagagatggacctcccagggcaaggtgctgccgcacgagctgcgcggc
gacgccgccaccctgcccgacgtcgattcctgggactcccggggcctgaaggccttccag
gaggcgatgaaggagcaccagcacaccgaggaactccgccttggctacgtcaccttcacc
cgcccccgctcactgctcctgggctcgggccactggtggggccccacgcagaagaaaccg
cgcggcccctccgacttcctccaggccctgtacgagcactgcgaggccgggcacggcgag
atcgaggcgtgggcggacgagcccgccgaggacgaggagaatccggccctgcacacggcg
agcgccgagcaggcctggcccctgcccctggacgagacgtccctcgcccggcgccgcgcg
gccgccgagacggtcctcgcccacctggaggaactcgccctccacgaggacggccacccc
acggccacgcacgaccccgacagccacgacgacccggactggccggcgccaccggacgac
gaggagctgccgtacgagaacgagccgccctacgagaacgagccaccctacgagggcgaa
ccaccgttcgaggacgatctcccgtacgacgaggaagcgctgtacggcgacgaaccgccg
tacgagggcgagccgccgggcgaaaagccccccttcacggacgacgaactcccctccacg
ggcgaagccccgtccggttgggactcttggtccacaacccgccccaccgtcccgcaccag
gcatcgtcccctgacgcttccgggacaccgcccccggaggcccccgatccgcgtggcggc
acgcgcgcgtacccgcaccgcccgcctcgcgagcccgcccgcctcaccgcgcaggaggtc
cgcctcacccctgaggaggcccgcaccctcgcctcctgggaccgcgacctggacgccctc
accggtgagctcctgcgcgcgcgggaggccgtcacggaagtccccctgcccgcgtcgctc
accgcgtcccaggtgctgcgcctggccgccgacccggacggttttgcacaggaactcgcg
cggcccatgccccgcccgccgcagcccgccgcccgccggggcacccgcttccacgcctgg
gtcgaagcgcgcttcgaagagctgaccctgcccgtgctggagccggaggagttgcccggc
accgatgccgagatcgccgacgagcgcgacctggaagcactcaaggaggccttcgagcgg
accgagtacgcgcaccgcacgccccaccgtgtggaggcgcccttccagctcgccatcgcc
ggacgcgtgatccggggccgtatcgacgccgtctacagggagagcgccgacggcaagggg
acgacgtacgagatcgtcgactggaagaccggtcgcacccgctccggcgaccccctccag
ctcgccctgtaccggctcgcctgggccgagcagcagggcgttcccctggagtccgtcaac
gcggcgttcctctacgtacgcacgggtgaggtcgtacgaccgcagggcctgccggaccgg
gccgcactggaacggctgctgctgggggagcctgccgcgacggcaaactgtgaggaaccg
cccaacgacgatgtcggtgcgggccgatag
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