Streptomyces spinosirectus: LXH13_27055
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Entry
LXH13_27055 CDS
T08958
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sspn
Streptomyces spinosirectus
Pathway
sspn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXH13_27055 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspn03021
]
LXH13_27055 (rho)
03019 Messenger RNA biogenesis [BR:
sspn03019
]
LXH13_27055 (rho)
Transcription machinery [BR:
sspn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LXH13_27055 (rho)
Messenger RNA biogenesis [BR:
sspn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LXH13_27055 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UIR20466
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All DBs
Position
5833535..5835568
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AA seq
677 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLDGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGGAAAPAKAAEADTKPKRRATSRSRTGDDAADAAEKKSAAPA
EKATAQQQIEIPGQPAGGPSRDGSEDAPAERRRRRATAEAGSPETVTAEAKSEPKAETPA
PQAQGESRNDAGDGEGRGRRDRRDRGRDRDRGDRNDRGDRNDRGDRGDRRGNKGDDQQGQ
RGQQNQQGGGRQDRQRDNGPQDDDDFEGGRRGRRGRYRDRRGRRGRDEMAGEPQIAEDDV
LIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHITGAVRQPKEGERR
EKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGK
GQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISS
TFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVD
STALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNAELKLDRKLA
DKRIFPAVDVDASGTRKEEILLASDELAIVWKLRRVLHALDQQQAVELLLDKMKQTKSNA
EFLMQIQKTTPTPGNGD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagactgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgcaggctcccggcggcgccgtggtaccggcctc
gacggcatggtgctggccgagctgcagcaggtcgcatccggcctcggcatcaggggcacg
gcgcgtatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgggggaggt
gccgccgctcccgccaaggccgcggaggccgacaccaagcccaagcgccgcgccacctcc
aggtcccgcacgggtgacgacgcggccgacgccgcggagaagaagtcggccgccccggcc
gagaaggccacggcccaacagcagatcgagattcccggccagccggccggcggcccctcg
cgtgacgggtcggaggacgctcccgccgagcgccgccgccgtcgcgccaccgccgaggcg
ggcagccccgagacggtcaccgccgaggccaagagcgagccgaaggccgagacgcccgcc
ccgcaggcgcagggcgagtccaggaacgacgccggtgacggcgagggccgaggccgccgc
gaccgccgtgaccgcggccgggaccgtgaccgcggggaccgcaacgaccgcggggaccgc
aacgaccgcggtgaccgtggcgaccgccgcggcaacaagggcgacgaccagcagggccag
cgcggccagcagaaccagcagggcggcggccgtcaggaccgccagcgcgacaacggcccg
caggacgacgacgacttcgagggcggccgccgtggccgtcgcggccgctaccgcgaccgt
cgtggccgtcgcggccgtgacgagatggccggcgaaccgcagatcgccgaggacgacgtc
ctgatcccggtcgcgggcatcctggacatcctggacaactacgcgttcatccggacctcc
ggctacctgccgggccccaacgacgtgtacgtctccctcgcccaggtccgcaagaacggt
ctgcgcaagggcgaccacatcaccggtgcggtccgccagcccaaggagggcgagcgccgc
gagaagttcaacgcgctggtccgcctcgactccgtcaacggcatggcgcccgaacacggc
cgcggccgcccggagttcaacaagctgaccccgctctacccgcaggaccgcctccgcctg
gagacggacccgggcgtgctgaccacccgcatcatcgacctcgtgtcgccgatcggtaag
ggccagcgcggtctgatcgtggccccgccgaagaccggcaagaccatgatcatgcaggcg
atcgccaacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctcgtcgac
gagcgtcccgaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatctcctcg
accttcgaccgcccggccgaggaccacaccacggtcgccgagctcgccatcgagcgcgcc
aagcgcctggtggagctgggtcacgacgtcgtcgtgctgctcgactcgatcacgcgtctg
ggccgtgcgtacaacctcgccgcgcccgcctccggccgcatcctgtccggtggtgtcgac
tcgaccgccctgtacccgccgaagcgcttcttcggtgcggcccgcaacatcgaggacggc
ggttcgctgaccatcctcgccaccgcgctggtggacaccgggtcccgcatggacgaggtc
atcttcgaggagttcaagggcacgggcaacgccgagctcaagctcgaccgcaagctcgcc
gacaagaggatcttcccggcggtggacgtcgacgcgtccggcacccgtaaggaagagatc
ctgctcgccagcgacgagctcgccatcgtctggaagctgcgccgggtgctgcacgcactc
gaccagcagcaggcggtagaactgctcctcgacaagatgaagcagaccaagtcgaacgcc
gagttcctgatgcagatccagaagacgacgcccactcccggcaacggcgactga
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