Streptomyces spinosirectus: LXH13_29000
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Entry
LXH13_29000 CDS
T08958
Name
(GenBank) HAMP domain-containing protein
Organism
sspn
Streptomyces spinosirectus
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAMP
HAMP_2
HATPase_c
Response_reg
HisKA
GAF_2
GAF
DUF4795
ApoLp-III
RNase_Y_N
Med21
Nup49_C
OmpH
OKR_DC_1_N
ATG14
Motif
Other DBs
NCBI-ProteinID:
UIR20826
LinkDB
All DBs
Position
6273879..6279347
Genome browser
AA seq
1822 aa
AA seq
DB search
MESGEATRGTKTRAKGGQSLNNQRKPRGGTTAVDTAAMNRLLAALVAMRDGNFRKRLTVS
GDGVMSEIAAVFNEVADRNLHLTNELSRVRRMVGREGKLTERLDAGAYEGSWAAAIDASN
ALVDDLVRPVSEVGRVLTAVAEGDLSPRMELRTQAQDGTGHPLRGEFLKVGRTVNNLVDQ
LSTFTDEVTRVASEVGTEGKLGGQARVRGMSGSWKDLTDSVNTMAYRLTAQVRDIALVTT
AVAKGDLSRKVTVHVAGEMLELKNTVNTMVDQLSSFSSEVTRVAREVGTEGELGGQAQVP
GVAGVWKDLTDSVNLMAGNLTAQVRGISQVTTAVANGDLSQKVTVSARGEVAQLADTINQ
MTETLRIFADEVTRVANEVGAAGQLGGQANVPGAAGTWKDLTDSVNTVFRNLTTQVRDIA
AVTTAVANGDLSQKVTVDVAGEMLELKNTVNGMVDQLSSFGSEVTRVAREVGVEGELGGQ
AQVPGAAGTWKDLTDSVNTAFRNLTGQVRNIAQVTTAVANGDLSQKVTVDVSGEMLQLKN
TVNTMVDQLSSFADQVTRMARDVGTEGRLGGQAVVPGVAGTWKELTDSVNGMAGNLTAQV
RNIAQVTTAVARGDLSQKIDVDARGEILELKNTINTMVDQLSGFADQVTRVAREVGTEGR
LGGQAQVPGVAGVWRDLTDSVNGMAGNLTAQVRNIAQVATAVARGDLSQKITVDARGEIL
ELKNTLNTMVDQLSSFAEEVTRVAREVGTEGQLGGQAEVQGVSGTWKDLTQSVNFMANNL
TIQVRNIAEVTTAVAKGDLSKKITVDAKGEILELVTTVNTMVDQLSSFAEQVTRVAREVG
TEGILGGQAHVPGVVGIWKDLSDNVNLMAKNLTVQVRNISQVAAAVANGDLTRTVTIEAR
GEVAQLADTFNTMVKTLSSFADQVTKVAREVGTDGILGGQAHVPGVAGTWKDLTESVNQM
ASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILELKTTINTMVDQLSSFAEEVTRVA
REVGTEGQLGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAIARVATAVTRGDLNLKID
VDASGEIQELQDYINKMIANLRDTTIANKEQDWLKGNLARISALMQGRRDLQDVASLIMS
ELTPVVSAQHGAFFVAMPLVDGKDLSAESEDAYELRMLGSYGYSIGSMPTSFRPGEALIG
TAAEEKRTILVENAPSGYLKIASGLGEAPPAQVIVLPVLFEGKVLGIIELASFTPFTQIQ
RDFLNQIAEMIATSVNTISVNTKTEQLLKQSQELTEQLRERSAELENRQKALQASNAELE
EKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLL
ILAKLLADNADANLTPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALV
QLVDYVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSV
ELVIRPAGRDVPGRIKEQLLEAGSMSDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQAD
GTTSRKYGGTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGYQQAL
PTLNAGDLVASADLAQISEAEIETPAEVKSYRETQNGAAALFRRRRRSGLDADGPASSEQ
WPSQDQDAESQPHRGIRFGGQKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVL
EQHDDVAVVLMDIMMPEMDGYATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASD
YVTKPVDPDHLLSVMEQWMRGE
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
gtggagtctggcgaagcgacgcggggcactaaaacgcgcgcgaaaggcggacagtccctg
aacaaccagcgcaaaccgcgcggcggaaccaccgcggtggacacggcggccatgaaccga
ctgctggcggcccttgtggcgatgcgtgacgggaacttccgaaagcggctcacggtgtcc
ggcgacggcgtgatgtcggagattgccgcggttttcaacgaggtggccgaccgcaatctg
catctgacgaacgagctatcccgagtacggcgcatggtcggccgcgagggcaagctcacg
gagcggctcgacgcgggcgcctatgagggttcctgggccgccgcgatcgacgcctccaac
gcgctcgtggacgacctcgtacgccccgtctccgaggtcgggcgggtactgaccgcggtg
gccgagggtgacctgtcgccgcgcatggagctgcggacgcaggcgcaggacggcaccggg
catccgctgcgcggggagttcctcaaggtcggccgtacggtcaacaacctcgtcgaccag
ctgtcgacgttcaccgacgaggtcacccgggtggccagcgaggtgggcaccgagggcaag
ctgggcggtcaggcacgcgtgcgtggcatgtcgggttcgtggaaggacctcacggactcc
gtcaacacgatggcgtaccggctgacggcgcaggtgcgggacatcgccctggtgacgacg
gcggtggccaagggtgatctgtcccggaaggtcacggttcacgtggccggcgagatgctg
gagctgaagaacaccgtcaacacgatggtggaccagctgtcgtcgttctcctccgaggtg
acgcgagtcgcgcgcgaggtgggcaccgagggcgagctcggcggccaggcgcaggtgccg
ggtgtggcgggcgtgtggaaggacctcaccgattcggtgaacctcatggccggcaacctc
acggcccaggtgcgcgggatctcccaggtcaccaccgcggtcgccaacggtgatctgtcg
cagaaggtgaccgtttcggcgcgcggcgaggtcgcgcagctcgcggacacgatcaaccag
atgaccgagacgctgcggatcttcgcggacgaggtcacgcgtgtggccaacgaggtcggc
gccgccggacagctgggcggccaggcgaacgtgccgggcgccgcggggacgtggaaggac
ctgacggactccgtcaacacggtgttccggaatctcaccacacaggtgagggacatcgcc
gccgtgacgacggccgtggccaacggtgacctgtcgcagaaggtcaccgtcgacgtggcc
ggcgagatgctggagctgaagaacaccgtcaacggcatggtggaccagctgtcgtccttc
ggttccgaggtcacgcgcgtggcgcgcgaggtcggtgtcgagggtgagctgggcggccag
gcgcaggtgcccggtgcggccggtacgtggaaggacttgaccgactcggtcaacactgca
ttccgcaacctcaccggtcaggtccgcaacatcgcccaggtgacgacggccgtggccaac
ggtgatctgtcgcagaaggtcaccgtcgacgtctccggcgagatgctccagctgaagaac
accgtgaacacgatggtggaccagctgtcgtccttcgccgaccaggtgacccggatggcc
cgggacgtggggacggagggccgcctgggcgggcaggccgtcgtaccgggcgtcgccggt
acgtggaaggagctcaccgactccgtcaacggcatggccgggaacctgacggcccaggtg
cgcaacatcgcccaggtgaccaccgcggtcgcgcgcggtgatctgtcgcagaagatcgac
gtggacgcgcgcggggagatcctggagctgaagaacaccatcaacacgatggtcgaccag
ctctccgggttcgccgaccaggtgacccgcgtggcccgcgaggtgggcaccgagggccgc
ctcggcggtcaggcgcaggtgcccggcgtcgcgggtgtgtggcgggatctgacggattcc
gtgaacggcatggccgggaacctgacggcccaggtgcgcaacatcgcccaggtcgccacc
gcggtggcccgcggtgacctgtcccagaagatcaccgtggacgcgcgcggggagatcctg
gagctgaagaacaccttgaacacgatggtcgaccagctgtcgtcgttcgcggaggaggtc
accagggtcgcccgtgaggtgggcacggagggccagctcggcggtcaggccgaggtccag
ggcgtctccggcacctggaaggacctcacgcagtccgtgaacttcatggcgaacaacctg
accatccaggtgcgcaacatcgccgaggtcacgaccgcggtcgccaagggcgacctgtcg
aagaagatcactgttgacgcgaagggcgagattcttgaactcgtcacgacggtcaacacg
atggttgatcagctgtccagcttcgccgagcaggtgacccgggtggcccgcgaggtgggc
accgagggcatcctgggcggccaggcgcacgtgccgggcgtcgtcggcatctggaaggac
ctcagcgacaacgtcaacctcatggccaagaacctgaccgtgcaggtgcgcaacatctcc
caggtcgcggcggcggtcgccaacggcgacctgacgcggacggtgacgatcgaggcgcgc
ggcgaggtcgcgcagctcgccgacaccttcaacaccatggtcaagacgctgagttcgttc
gccgaccaggtcaccaaggtggcccgcgaggtgggcacggacggcatcctcggcggccag
gcgcacgtaccgggtgtggccggtacgtggaaggacctcaccgagtccgtgaaccagatg
gcgtccaacctgaccggtcaggtgcgcaacatcgccatggtcaccacggccatcgccaag
ggtgacttgaccaagaagatcgacattgacgcccgcggcgagatcctcgaactcaagacg
acgatcaacacgatggttgatcagctgtccagcttcgccgaggaggtcacccgagtcgcc
cgcgaggtgggcacggaggggcagctcggcggccaggcacgcgtgcgtgacgtcgacgga
acctggcgcgacctcaccgagtccgtgaacgagatggccgggaacctcacccggcaggtg
cgcgccatcgcgcgcgtggcgaccgcggtgacccgtggcgacctgaacctgaagatcgac
gtcgacgcgtccggcgagatccaggaactgcaggactacatcaacaagatgatcgccaac
ctgcgcgacaccaccatcgccaataaggagcaggactggctcaagggcaacctcgcccgt
atctcggcgctgatgcagggccgccgcgacctgcaggacgtcgcctcgctgatcatgagc
gagctgacgccggtggtctcggcgcagcacggcgcgttcttcgtggccatgcccctggtg
gacggcaaggacctgagcgccgagagcgaggacgcgtacgaactgcgcatgctggggtcg
tacggctactcgatcggctccatgccgacgtccttccgcccgggtgaggcgctgatcggg
acggccgcggaggagaagcgcacgatcctggtggagaacgcgcccagcggctatctgaag
atcgcctccggcctcggcgaggcgccgccggcgcaggtgatcgtccttcccgtgctgttc
gagggcaaggtgctcggcatcatcgaactggcctccttcacgccgttcacgcagatccag
cgggacttcctcaaccagatcgccgagatgatcgcgaccagcgtcaacaccatctcggtg
aacaccaagacggagcagctgctgaagcagtcgcaggagctgaccgagcaactgcgcgag
cgctcggcggagttggagaaccggcagaaggccctccaggcgtccaacgccgaactggag
gagaaggccgagctgctggcccagcagaaccgcgacatcgaggtgaagaacaccgagatc
gaggaggcgcgccaggtcctggaggagcgcgccgaacagctcgcggtctccatgcgctac
aagagcgagttcctggccaacatgtcgcacgagctgcgtacgccgctcaactcgctgctg
atcctggccaagttgctcgccgacaacgcggacgccaacctcaccccgaagcaggtcgag
ttcgccgagacgatccacggcgcgggttccgacctgctccagctgatcaacgacatcctc
gacctgtcgaaggtggaggcgggcaagatggacgtctccccgacgcgtatcgcgctcgtc
cagctcgtcgactacgtggaggccaccttccggccgctgaccgcggagaagggcctggac
ctgtccgtacgggtctctccggagctgcccgccaccctgcacaccgacgagcagcggttg
ctccaggtgctgcggaacctgctgtccaacgcggtgaagttcaccgactccggctcggtc
gagctggtgatccggccggccgggcgggacgtccccgggaggatcaaggaacagctcctc
gaggccggttcgatgagcgatccggacgcggacctgatcgcgttctcggtgaccgacacc
ggtatcggcatcgccgccagcaagatgcgggtgatcttcgaggcgttcaagcaggcggac
ggcacgaccagccgcaagtacggcggcaccggcctcgggctgtcgatctcccgggagatc
gcccagttgctcggcggtgagatccacgcgcagagcgagccgggacggggatcgacgttc
acgctgtatttgccactgcatccgagcgaactgcccccgcagggttatcagcaggccctg
ccgaccctgaacgcgggcgatctggtggcctccgcggacctggcccagatctccgaggcg
gagatcgagacgccggccgaggtgaagtcgtaccgcgagacgcagaacggcgccgccgcg
ctcttcaggcgccgccgcaggagcggcctggacgcggacggaccggcctcgtcggagcag
tggccgtcccaggaccaggacgcggagtcgcagccgcaccggggcatccgcttcggtggc
cagaaggtgctcatcgtcgacgacgacatccgtaacgtgttcgcgctgaccagtgtcctg
gagcagcacgggctgtccgtgctgtacgccgagaacggtcgcgagggcatcgaggtcctg
gagcagcacgacgacgtggcggtcgtcctgatggacatcatgatgcccgagatggatgga
tatgcgacgacgacggcgatccgcaggatgccgcagttcgcgggtctgccgatcatcgcg
ttgaccgccaaggcaatgaagggagaccgggagaaggcgatcgagtccggcgcgtccgac
tatgtgaccaagccggtcgatcccgatcaccttctgtccgtgatggaacagtggatgcga
ggggagtga
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