Streptomyces spinosirectus: LXH13_34470
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Entry
LXH13_34470 CDS
T08958
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sspn
Streptomyces spinosirectus
Pathway
sspn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LXH13_34470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspn03400
]
LXH13_34470
Enzymes [BR:
sspn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LXH13_34470
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LXH13_34470
DNA repair and recombination proteins [BR:
sspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LXH13_34470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Zn_ribbon_RRN7
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
UIR21834
LinkDB
All DBs
Position
7533036..7533899
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AA seq
287 aa
AA seq
DB search
MPELPEVEALKDFLSEHLVGHEIVRVLPVAISVLKTYDPPLTAVEGREVTAVHRHGKFLD
LVTDGGPHFVTHLARAGWLHWKDRLPDGPPRPGKGPLALRTALETGAGFDLTEAGTQKRL
AVYVVHDPQEIPGVARLGPDPLADDFDAGRFAELLKSERRQIKGALRDQSLIAGVGNAYS
DEILHAAKMSPFKLAASLTPEETDRLYEALRSTLIQAVERSRGVAAGRLKAEKKSALRVH
GRTGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGRPLADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcccgaggtggaagcgctcaaggacttcctcagcgagcacctggtcggt
cacgagatcgtgcgggtgctgcccgtcgcgatcagcgtcctgaagacgtacgaccccccg
ctcacggccgtcgagggccgcgaggtcaccgccgtgcaccggcacggcaagttcctcgac
ctcgtgaccgacggcggcccgcacttcgtcacccacctggcccgtgcgggctggctgcac
tggaaggacaggttgccggacggcccgccccgccccggcaagggcccgctcgccctgcgc
acggccctggagacgggggcgggcttcgacctcacggaggcgggcacccagaaacgcctc
gcggtctacgtcgtccacgacccccaggagatcccgggcgtcgcccgcctcggccccgat
ccgctcgcggacgacttcgacgccgggcgcttcgccgagctgctgaagtccgagcggcgt
cagatcaagggcgccctgcgcgaccagagcctgatcgctggagtgggcaacgcctacagc
gacgagatcctgcacgcggcgaagatgtcccccttcaagctggccgcgtccctcactccc
gaggagaccgaccgcctgtacgaggccctgcgcagcaccctcatccaggccgtcgagcgc
tcgcgcggagtggcggcgggccggctcaaggcggagaagaagagcgccctgcgggtccac
gggcgtacgggcgagccctgcccggtgtgcggggacaccgtccgcgaggtctccttcagc
gattcctcgctccagtactgcccgacctgtcagaccggcggcagaccgctggcggaccgc
aggatgtcacggctgctcaaatag
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