Streptomyces spongiicola: DDQ41_01645
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Entry
DDQ41_01645 CDS
T06937
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
sspo
Streptomyces spongiicola
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspo03019
]
DDQ41_01645
Enzymes [BR:
sspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DDQ41_01645
Messenger RNA biogenesis [BR:
sspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DDQ41_01645
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AWK07832
UniProt:
A0ABM6V150
LinkDB
All DBs
Position
complement(385076..387904)
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AA seq
942 aa
AA seq
DB search
MTQDLSPAERYAAARIRAAEQATALAPFREMYDFGLDPFQVEACEALEAGKGVLVAAPTG
SGKTIVGEFAVHLALSQGRKCFYTTPIKALSNQKYSDLVKRYGPGKVGLLTGDNSVNPEA
PVVVMTTEVLRNMLYAGSRSLSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSL
SATVSNAEEFGDWLDTVRGDTEVIVSESRPVPLWQHVLAGRRMYDLFEEETDHGGRGAAR
REVNPDLVRLARTENSRTYNPRDRRRGKMVREADRERERRQRGRIWTPGRPEVVERLDAE
GLLPAITFIFSRAACEAAVQQCLFAGLRLNDEEARLEVRSIVEARTASIPREDLHVLGYY
EWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLV
KWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMDPGALAGLAGTRTYPLRSS
FKPSYNMAVNLVQQFGRHRSRELLETSFAQFQADRSVVGISRQVQRNEEGLEGYREGMTC
HLGDFEEYARLRRELKDRETELAKQGAAQRRAAAADSLEKLRPGDVIHVPTGKFAGLALV
LDPGLPAGRSNGHRGYEYHDGPRPVVLTAERQVKRLASMDFPVPVEPLERMRIPKSFNPR
SPQSRRDLASALRTKAGHIVPDRHRRPRAAAADDREIARLRREIRAHPCHGCDEREDHAR
WAERHHRLQRDTRQLERRIEGRTNTIARTFDRIVALLTELDYLRGDEVTEHGRRLARLYG
ELDLLASECLRDGVWEGLNPAELASCVSALVYEARQADDAVAPRLPSGRSKAALGEMVRI
WGRLDALEEEFRINQAEGVGQREPDLGFAWAVYQWASGRGLDEVLREAEMPAGDFVRWTK
QVIDVLGQIAAAAPGENSTVARNARKAVDAVLRGVVAYSSVG
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggacctctcaccagccgagcggtacgcggccgcccggatccgtgccgccgag
caggccaccgcgctcgctcccttccgcgagatgtacgacttcgggctggacccgttccag
gtcgaggcctgcgaggcgctggaggcgggcaagggcgtgctcgtggcggcccccacgggt
tccgggaagacgatcgtcggcgagttcgccgtgcacctggctctctcccaggggcgcaag
tgcttctacacgacccccatcaaggcgctgtccaaccagaagtactcggatctggtcaag
cggtacggccccggcaaggtcggcctgctcaccggcgacaacagcgtcaaccccgaggcg
ccggtcgtcgtcatgaccaccgaggtcctgcgcaacatgctgtacgcgggctcccggtcg
ctgagcggcctcgggtacgtggtcatggacgaggtgcactacctctccgaccgcttcaga
ggcgccgtctgggaagaagtgatcatccacctccccgagtcggtgaccctggtctcgctc
tcggcgacggtgtccaacgcggaggagttcggcgactggctcgacaccgtacgaggcgac
accgaagtgatcgtctcggagtcgcgccccgtgcccctgtggcagcacgtgctcgccgga
cgccggatgtacgacctcttcgaggaggagaccgaccacggcggccgcggcgccgcccgg
cgcgaggtcaaccccgacctggtccgcctggccaggacggagaactcccgcacgtacaac
ccgcgtgaccgccgccgcggcaagatggtccgcgaggccgaccgcgagcgcgagcgccgg
cagcggggccgcatctggaccccggggcggcccgaggtcgtcgagcggctggacgcggaa
gggctgctacccgccatcacgttcatcttcagcagagccgcctgcgaggccgccgtccag
cagtgcctgttcgccggactgcggctcaacgacgaggaggcgcgcctggaggtgcggtcg
atcgtcgaggcgcgcacggcctccatcccccgcgaggacctccacgtcctcgggtactac
gagtggctggagggactggagcggggcatagccgcacaccacgccggaatgctccccacg
ttcaaggaggtcgtcgaggaactcttcgtccgcggcctcgtcaaggccgtgttcgccacc
gagaccctggccctcggcatcaacatgcccgccaggtccgtggtgctggagaagctcgtc
aagtggaacggcgagcagcacgccgacatcacccccggcgagtacacccagctgaccgga
cgcgcgggccggcgcggcatcgacgtggagggccacgccgtcgtgctctggcagcgcggg
atggacccgggcgcgctcgccggactcgccggcacccgtacgtatccgctgcgctcgagc
ttcaagccgtcgtacaacatggcggtcaacctcgtgcagcagttcgggcgccaccgctcg
agggaactgctggagacctccttcgcccagttccaggcggacaggtcggtcgtcggcatc
tcgcgccaggtgcagcgcaacgaggaggggctcgagggctaccgggagggcatgacctgc
cacctgggggacttcgaggagtacgcgcggctgcgccgcgaactgaaggaccgtgagacc
gaactggccaagcagggcgccgcccagcgccgggcggccgccgcggactcactggagaag
ctcaggccgggcgacgtcatccacgtgcccaccggcaagttcgccgggctcgcgctcgtc
ctcgaccccgggctgccggccggcaggtccaacggccaccggggctacgagtaccacgac
gggccgcgccccgtggtgctgacggccgaacgccaggtcaagcggctcgcctcgatggac
ttcccggtccccgtggagccgctggagcggatgcggatccccaagtccttcaacccgcgc
tccccccagtcccggcgcgacctcgcctccgccctgcggaccaaggccgggcacatcgtg
cccgaccggcaccgcaggccgcgcgccgcggccgcggacgaccgcgagatcgcccggctg
cgcagggagatccgcgcccatccctgccacggctgcgacgaacgcgaggaccacgcccgc
tgggcggagcgccaccaccggctccagcgcgacacccgccagctggagcgccgcatcgag
ggccggacgaacaccatcgcccgcaccttcgaccgcatcgtcgcgctgctcaccgagctg
gactacctccgcggcgacgaggtcaccgagcacggccgccggctcgcccggctctacggc
gagctggacctgctggccagcgagtgcctgcgcgacggggtgtgggaggggctgaacccg
gccgaactggcctcctgcgtctcggctctggtgtacgaggcacgccaggccgacgacgcc
gtggcgcccaggctgccctccggcaggtcgaaggcagcgctcggcgagatggtgcggatc
tggggccggctggacgcgctcgaggaggagttccgcatcaaccaggccgagggcgtgggc
cagcgcgagcccgacctcggattcgcctgggcggtgtaccagtgggcctcgggcaggggc
ctggacgaggtgctgcgcgaggcggagatgcccgcgggcgacttcgtgcgctggaccaag
caggtcatcgacgtactcggccagatcgcggccgcggcgccgggcgagaactccacggtg
gcgcgcaacgcccgcaaggccgtggacgcggtgctgcgcggtgtggtggcgtacagctcg
gtcggctga
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