Streptomyces spongiicola: DDQ41_02535
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Entry
DDQ41_02535 CDS
T06937
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sspo
Streptomyces spongiicola
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspo03019
]
DDQ41_02535 (hrpB)
Enzymes [BR:
sspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DDQ41_02535 (hrpB)
Messenger RNA biogenesis [BR:
sspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DDQ41_02535 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_30
AAA_11
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AWK07995
LinkDB
All DBs
Position
596466..599051
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AA seq
861 aa
AA seq
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MVREEALGLLPVGTALPALRRALDTRGAAVLCAPPGTGKTTLVPIALAGLTDDAGAGARG
RVVVAEPRRIAARAAARRMAWLLGEKAGGRVGFTVRGERVVGPDTAVEVVTTGVLLQRLQ
RDQELPGVGTVILDECHERHLDADTAAAFLLDVRETLRPELRLVAASATTDAEGWARLLG
DAPVVRAEGTAHPVEVVWAPPARPVRPPHGTRVDPALLAHVASVVRGALAERTGDVLCFL
PGVAEIARVARLLGDTGAEVLQVHGRAPAAVQDAALSPGRHRRVVLATSVAESSLTVPGV
RVVVDAGLAREPRTDHARGLGSLTTVRASRAAARQRAGRAGREAPGTVYRCWAEAEHARL
PRFPAPEIRVADLTAFALQAACWGDPDAAGLALPDPPPPGAMAAARSVLAAVGAVGPSGR
ATGRGRRMARLGLHPRLARALVDGAPEVGPRRAAEVVALLSEEPPREYGDDLAAAWRTAR
SGRDGYAARWRAEADRLTRSLGGAGDTPAGTAAPADAGDDLAAPGPGHASASASASASAS
ASDDTVAGFVTALAFPERIARVRSGTSYLMVSGTGAELGEGSPLRGSTWLAVAVADRAAQ
AASARVRLAAAVDEGTARAAAEHLRSLGEEVRWAGGDVAARRVERLGAVELSVRPLPEPA
AGLVRDALLEGLRREGPGLLGWSRDAVALRQRLGFLHRVRGAPWPDMSAAALLDRAGEWL
EPELSRARRRADLAGIDAGPCLRRLLPWATGEAARLDELAPERIEVPSGSRIRVDYTGEQ
PVLAVKVQELFGLLQTPRLAGVPVLVHLLSPAGRPAAVTADLASFWRDGYRAVRAELRGR
YPKHPWPEDPATAEPTRGVKR
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
gtggtccgcgaggaggccctcggcctgcttcccgtaggcacggccctccccgcgctgcga
cgggccctggacacccgcggcgccgccgtgctgtgcgcgccgcccggcacgggcaagacg
acactcgtgccgatcgcgctcgccggactgacggacgacgccggcgccggcgcccggggc
cgggtggtggtcgccgagccgcggcggatcgcggcgcgggcggcggcacggcggatggcg
tggctgctcggcgagaaggcgggcggccgggtcggcttcacggtgcgcggagagcgggtc
gtcggaccggacaccgccgtcgaggtcgtcaccacgggcgtgctgctccagcgcctccag
cgcgaccaggaactccccggggtcggcaccgtgatcctcgacgagtgccacgagcggcac
ctggacgcggacaccgcggcggcgttcctgctcgacgtgcgcgagaccctgcggcccgaa
ctgcggctggtggcggcgtcggccacgacggacgcggagggctgggcccggctcctcggc
gacgctccggtcgtccgggccgagggcaccgcccacccggtcgaggtggtgtgggcgcca
cccgcccgcccggtgcgcccgccgcacggcacccgggtcgacccggcgctgctcgcacat
gtggcgtcggtggtccgcggggcgctggccgagcggaccggggacgtgctctgcttcctg
ccgggggtggccgagatcgcgcgggtcgcccggctgctcggggacaccggggcggaggtg
ctccaggtgcacgggcgggcaccggcggccgtgcaggacgcggcgctctcccccggacgg
caccgcagggtggtgctggcgacctcggtcgcggagtcgtcgctgaccgtgccgggcgtg
cgggtcgtcgtggacgccggactcgcccgggagccgcgcaccgaccacgcccggggcctc
ggctcgctcacgacggtacgggcctcccgggccgcggcccggcagcgggcgggccgggcg
gggcgcgaggctcccggcacggtctaccgctgctgggccgaggcggagcacgcccggctg
ccgcgattccccgcgccggagatccgggtggcggacctgacggcgttcgccctgcaggcg
gcgtgctggggcgatccggacgcggccggcctcgccctgccggatccgccgcccccgggc
gcgatggcggcggcccgctcggtcctcgcggccgtgggcgcggtcggcccgtcggggcgg
gcgaccggccgggggcggcggatggcccggctcggactccacccgcggctcgcgcgagcc
ctggtcgacggcgcgccggaggtgggtccgcggcgcgccgccgaggtcgtcgcgctgctg
agcgaggaacccccgcgggagtacggggacgacctggcggccgcctggcgcacggcccgt
agcggccgcgacggctacgccgcccgctggcgcgcggaggcggaccggctgacccgctcg
ctcggcggggcgggggacaccccggccggcaccgccgccccggccgacgccggggacgac
ctggccgcccccggccccggccatgcttccgcttccgcctccgcctccgcctccgcctcc
gcctccgacgacacggtcgccgggttcgtgaccgcgctcgccttccccgagcgcatcgcg
cgggtgaggagcggcacctcgtacctgatggtctccgggaccggcgcggagctcggcgag
ggctcaccgctgcgaggctccacctggctggcggtggcggtggccgaccgggcggcgcag
gccgcgtccgcgcgggtgcggctcgccgccgccgtggacgaggggacggcacgcgccgcc
gctgagcatctgcgctccctcggcgaggaggtgcgctgggcgggcggcgacgtcgccgcc
cgccgggtggagcggctgggcgcggtggagctgtccgtacgcccgctgccggagccggcg
gccgggctggtccgggacgcgctgctggagggactccggcgcgagggcccggggctgctg
gggtggtcgcgggacgccgtggcgctgcggcagcggctcggttttctgcaccgggtacgg
ggcgccccctggccggacatgtcggccgcggccctgctggaccgcgccggtgagtggctg
gaaccggagctttcccgggcccgccgccgggccgatctggcggggatcgacgccgggccg
tgcctgcgacggctgctgccctgggccacaggcgaggcggcccgcctcgacgaactggcc
ccggagcggatcgaggtgcccagcgggtcgcggatccgggtggactacacgggcgagcag
cccgtgctggccgtgaaggtccaggagttgttcgggctccttcagacaccgcgcctggcg
ggggtgcccgtgctcgtccatctcctctcccccgcggggcgtcccgcggcggtgaccgcg
gacctcgcctcgttctggcgcgacggctaccgggcggtgcgggccgaactgcgcgggcgc
tacccgaagcacccctggccggaggacccggcgacggcggagcccacgcggggtgtgaag
cgctga
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