Streptomyces spongiicola: DDQ41_02560
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Entry
DDQ41_02560 CDS
T06937
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03030
DNA replication
sspo03410
Base excision repair
sspo03420
Nucleotide excision repair
sspo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDQ41_02560
03410 Base excision repair
DDQ41_02560
03420 Nucleotide excision repair
DDQ41_02560
03440 Homologous recombination
DDQ41_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspo03032
]
DDQ41_02560
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_02560
Enzymes [BR:
sspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DDQ41_02560
DNA replication proteins [BR:
sspo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DDQ41_02560
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DDQ41_02560
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDQ41_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
HHH_2
NYN_YacP
baeRF_family2
Motif
Other DBs
NCBI-ProteinID:
AWK08000
LinkDB
All DBs
Position
complement(603930..606587)
Genome browser
AA seq
885 aa
AA seq
DB search
MDGHSLAYRAFFALPAENFTTASGQTTNAVYGFASMLANTLRDEAPTHFAVAFDVSRKTW
RSRDFPEYKANRSSTPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLATQAEAAG
FEVLIVTGDRDSFQLVSDHVTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPDFAALRGD
PSDNLPGIPGVGEKTATKWISQFGSFAELVGRADEVKGKVGQALRDHLEAVRLNRHLTEL
VRDVELPKSVADLGRAPYDRTALKGFLEVLEIRNPSLRERLLAVDPGAAEDDVPAPAAGV
ELDGSVLGPGELAPWLERHGGQPLGVASVAAWALGVGSVSEIALAAAGGEAAWFDTTRLD
EADERALAAWLADPDRPKVVHSAKEALRVLPEYGWDLRGIAMDTALAAYLVKPGRRSFAL
DALSVEYLHRELAPAAADGQLAFGTEDEQAEADALMAQARAVLDLGEAFGGKLEEVGAGE
LLHGMELPTSLLLARMERHGIRADRAHLEAMEQQFAGAVQQAVKEAHASVGHEFNLGSPK
QLQEVFFGELNLPKTKKTKTGYTTDADALAWLSGQTDHELPVIMLRHREQARLRSTVEGL
IKTIAADGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTA
DYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVDRSEVDAEMRRKTKAMSYGL
AYGLSAFGLSQQLNIEAAEARTLMDTYFERFGGVRDYLRRVVDEARATGYTATMSGRRRY
LPDLNSDNRQRREAAERMALNAPIQGTAADIVKMAMLRVDEGLRAAGLTSRMLLQVHDEI
VLEIAPGERERVEELVRREMSAAAELRAPLDVSVGVGPDWESAAH
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcactcgctggcgtaccgggcgttcttcgccctgcccgcggagaacttcacc
accgcgagcggccagacgaccaacgcggtctacggcttcgcgtcgatgctggcgaacacg
ctccgcgacgaggcgcccacgcacttcgccgtggccttcgacgtctcccggaagacctgg
cggtcccgggacttccccgagtacaaggccaaccgctcctcgaccccggacgagttcaag
ggccaggtcgagctgatcggcgagctgctcgacacgatgaacgcggtgcggttcgcggtg
gacggcttcgaggccgacgacatcatcgcgaccctggccacccaggccgaggccgcgggc
ttcgaggtgctgatcgtcaccggcgaccgggactccttccagctggtctccgaccacgtc
acggtgctctacccgaccaagggcgtcagcgagctgacccgcttcaccccggagaaggtc
caggagaagtacgggctgaccccctcccagtacccggacttcgccgccctgcgcggcgac
ccgtccgacaacctcccgggcatccccggcgtcggcgagaagaccgccaccaagtggatc
agccagttcggctcgttcgcggagctggtcgggcgcgccgacgaggtcaagggcaaggtc
ggccaggcgctccgcgaccatctggaggccgtcaggctcaaccgtcacctgacggaactg
gtccgtgacgtggagctgccgaagtccgtcgccgacctcgggcgcgcgccgtacgaccgg
accgcgctgaagggcttcctggaggtcctggagatccgcaacccgagcctgcgcgagcgg
ctgctcgccgtcgacccgggcgccgccgaggacgacgtcccggccccggccgccggcgtg
gagctggacggcagtgtgctcggccccggcgagctggcgccctggctggagcggcacggc
ggacagcccctcggtgtcgcctcggtcgccgcctgggcgctgggcgtcggcagcgtcagc
gagatcgcgctcgcggccgccgggggagaggcggcctggttcgacacgacccggctcgac
gaggccgacgagcgggccctcgccgcctggctcgccgacccggaccggccgaaggtcgtg
cacagcgcgaaggaggcgctgagggtcctccccgagtacggatgggacctgcggggcatc
gccatggacaccgccctcgccgcctacctggtcaagcccggccgccggtccttcgcgctg
gacgccctctccgtggagtacctgcatcgcgagctggccccggccgccgccgacgggcag
ctggccttcggcaccgaggacgagcaggccgaggccgacgccctgatggcgcaggcccgt
gcggtcctcgacctgggcgaggccttcggcgggaagctcgaggaggtcggcgccggcgag
ctgctgcacggcatggaactgcccacgtcgctgctcctggcgaggatggagcggcacggc
atccgcgccgaccgggcccatctggaggccatggagcagcagttcgccggggcggtgcag
caggccgtcaaggaggcgcacgcctcggtgggccacgagttcaacctcggctcgcccaag
cagctccaggaggtcttcttcggggagctgaacctccccaagaccaagaagaccaagacc
ggctacaccaccgacgccgacgcgctggcctggctctccggccagaccgaccacgagctg
ccggtcatcatgctgcgccaccgcgagcaggcccggctgcgctccaccgtcgagggcctg
atcaagaccatcgccgcggacggccggatccacaccaccttcagccagacggtggccgcg
accggacggctctcctccaccgacccgaacctgcagaacgtgccggtgcgcacggacgag
ggccgggcgatccgccgcggcttcgtcgtcggcgagggcttcgagtcgctgatgaccgcc
gactacagccagatcgagctgcgcgtcatggcccacctctcggaggacgagggcctgatc
gaggcgttcacctcgggcgaggacctgcacacgacggtggcctcccaggtcttcggcgtg
gaccggtccgaggtcgacgcggagatgcgccgcaagaccaaggcgatgtcgtacggactg
gcctacggcctctccgcgttcggcctcagccagcagctgaacatcgaggcggccgaggca
cggaccctgatggacacctacttcgagcggttcggcggggtccgcgactatctgcgccgt
gtcgtggacgaggcgcgggccacggggtacacggcgacgatgtccggccgccggcggtac
ctcccggacctcaacagcgacaaccgccagcgccgcgaggcggccgagcgcatggcgctg
aacgcgccgatccagggcacggcggcggacatcgtcaagatggcgatgctgcgggtcgac
gaggggctgcgggcggcggggctcacctcccggatgctgctccaggtccacgacgagatc
gtcctggagatcgccccgggcgagcgggagcgggtcgaggaactcgtccgccgtgagatg
tccgcggcggcggagctgcgcgcaccgctggacgtctcggtcggcgtcggcccggactgg
gagtccgccgcccactga
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