Streptomyces spongiicola: DDQ41_06640
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Entry
DDQ41_06640 CDS
T06937
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDQ41_06640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspo03019
]
DDQ41_06640
03009 Ribosome biogenesis [BR:
sspo03009
]
DDQ41_06640
Enzymes [BR:
sspo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DDQ41_06640
Messenger RNA biogenesis [BR:
sspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DDQ41_06640
Ribosome biogenesis [BR:
sspo03009
]
Prokaryotic type
rRNA processing factors
DDQ41_06640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWK08655
LinkDB
All DBs
Position
complement(1526535..1530536)
Genome browser
AA seq
1333 aa
AA seq
DB search
MLEPKDPGVTGDTEENDNSTPSDTLPPRRRRAASRPAGPPAGAVQSAQVETVADVTATLS
AAIPSAEDGSAGDGAGAPAPRTRRRAARKATAPAGSPDPVEVVAESASAEAPATSPAVAR
TAEAVAADEDIEEGAVSETAAETGPAREPARRTRRRATAPAGAPQAAGSAAAADEATGPA
GAVAETAEPAAAGAPAAGEPVEEAPRGRTRRRATRRAAAPAGAPEAAVEDESAAGESLPA
DTVARIAADEAEAEAAGKAASRGRTRRRVAAGRAAAEPAQDERADEEREVREERGAEAGT
ARGEREEKAGPAARGRRAGRPAVPVFQAPVFTEPVFQTPETAAAAAAAAAADEGDDEGDE
AAEAAEAAEAAETGGSAAASAQQRRRRRRRGESAPAVETTESEPADEAEVESGEPETDDT
EESDDYEGRPSRRRRRGGRRRRRGESADAAEAGADEDSEAEAGAEEEPEPEDDEEEQEAA
TPSAAGTSSSRRRRRRRRRSGDAAEPEPGADEPERTVVKVREPRPKAEPSDEVQSIKGST
RLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGDRTQIGVLEDNVLVE
HYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGLANGPRR
IESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERAR
LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIRGKAKSGNAPTLLYGEP
DMTVRVVRDIFNEDFSKVIVSGDEAWGTVHGYVSHVAPDLADRLQRWTSETDVFAVHRID
EQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIV
RQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKR
VGQGLLESFSETCVHCNGRGVIVHMEQPAAAGGGGGKRRKRGRGGAEHVHEHEVVVEAPG
AEAAPSGLEETEAEVAAEAAAPTALPEPAFAPDEELYSSAAEAEAAASRRGRRRVSRKAT
APAGAPRQTEPVEPVEPVAAGVEQAEPVPAGETAEAAAEPVAGPEAVPVEAEQAESAPAG
RTRRRATRKASAPAGSPKGGEAAEIVTETAEVPAEAPAAAAPGAPADEVPAAAPPRARRR
VTRKVTAPAGSPSGAEDAAVVVVVAPQEPGAEAVPAEAEEPADAPAKKAARKTAKKATAK
KAATKKTAAEKTTAAKKATAQKATVKKTAVKKATVKKTAVKKTTAKKTAKTAAGKTAAAE
QQSLPTVTASAES
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaaggaccccggtgtgaccggggacaccgaagagaacgacaactccacg
ccgagcgacacgctgccgccgcgtcgccgccgcgccgcgtcgcggccggcgggcccgccg
gcgggtgccgtgcagtccgcgcaggtggagaccgtcgccgatgtgacggccaccctgtcg
gccgccataccgtccgcggaggacgggtccgccggggatggtgccggggcgcccgcgccg
cgtacccgtcggcgggcggcccgcaaggcgaccgcgcccgccggttcgccggaccccgtc
gaggtcgtcgcagagtccgcctccgccgaggcgcccgcgacctcgcctgctgtggcgcgt
acggccgaggccgtcgccgccgacgaagacatcgaggaaggtgccgtgagcgagaccgcc
gcggaaaccgggcccgccagggagcccgcgcgccgcacccgccgccgggccaccgccccc
gcgggcgcgccgcaggccgccgggtccgccgctgccgccgacgaggccaccgggcccgcc
ggggctgttgccgagaccgctgaacccgccgctgccggtgcgccggccgcgggggagccg
gtggaggaggcgccgcgtggccgcacgcgtcgccgtgccacgcgccgggccgccgccccc
gccggtgcgccggaggccgccgtggaggacgagtccgcggcgggtgagagcctgcccgcc
gacaccgtcgcacgcatcgccgccgacgaggccgaggccgaggcggcggggaaggctgcc
tcgcggggccgtacccgccgccgggtcgccgccgggcgggccgccgccgagcccgcgcag
gacgagcgcgccgacgaggagcgcgaggtgcgcgaggagcgcggggcggaggccggtacc
gcgcggggagagcgcgaggagaaggccgggccggccgcccgcggacgccgggccggaagg
cccgcggtgccggtgttccaggcacccgtcttcaccgagccggtgttccagaccccggag
accgcggccgctgccgccgctgccgccgcggccgacgagggggacgacgagggggacgag
gccgcggaggcggctgaggcggctgaggctgcggagaccgggggctcggccgccgcgagc
gcccagcagcgccgccgccgtcgccgtcgcggcgagtccgcgcccgccgtcgagaccacg
gagtccgagccggccgacgaggccgaggtcgagtccggcgagccggagaccgacgacacc
gaggagtccgacgactacgagggccgtccctcccggcgtcgccgccgcggcggccgtcgc
cgtcgccgtggcgagtccgccgatgcggcggaggccggggccgacgaggactccgaggcg
gaggccggggccgaggaggaaccggagcccgaggacgacgaggaggagcaggaggccgcc
accccgtccgccgcggggaccagcagcagccgccgtcgccgtcgccgtcgccgtcgcagc
ggtgacgcagccgagcccgagcccggtgccgacgagccggagcgcacggtcgtcaaggtc
cgggagccccgtcccaaggcggagccttcggacgaggtgcagtcgatcaagggttccacc
cggctggaggcgaagaagcagcgccgccgagagggccgcgagcagggccgccgccgggtg
ccgatcatcaccgaggcggagttcctggcgcgccgcgaggccgtcgagcgcgtgatggtc
gtgcggcagcacggggaccgcacccagatcggcgttctcgaggacaacgtgctggtcgag
cactacgtcaacaaggagcagtcgacgtcgtacgtcggcaacgtctacctgggcaaggtg
cagaacgtcctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgcaacgcg
gtcctgtacgcgggtgaggtgaacttcgaggcgctcggcctcgccaacggcccgcgccgt
atcgagtccgcgctcaagtccggccagtcggtgctggtgcaggtcaccaaggacccgatc
ggccacaagggtgcccggctcaccagccaggtgtcgctgcccggccgctacctggtgtac
gtgcccgagggttcgatgacgggcatcagccggaagctccccgacaccgagcgggcccgg
ctgaagacgatcctgaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgcc
gcggagggcgccagcgaggacgagctgcgccgcgacgtggagcggctgcaggcccagtgg
gaggagatccgcgggaaggcgaagagcggcaacgccccgacgctgctctacggtgagccg
gacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtcatcgtg
agcggcgacgaggcgtgggggaccgtccacggctatgtgtcgcacgtcgcgcccgacctg
gcggaccggctccagcgctggaccagcgagaccgacgtgtttgccgtgcaccggatcgac
gagcagctgatgaaggcgctggaccgcaaggtctggctgccctcgggcggttcgctggtg
atcgacaagaccgaggcgatggtcgtggtcgacgtcaacaccggcaagttcaccggccag
ggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcggccgaggagatcgtg
cgccagctgcggctgcgggacctcggcggcatcgtggtcatcgacttcatcgacatggtc
ctggagtccaaccgcgacctggtgctgcggcgcctgctggagtgcctgggccgggaccgc
acgaagcaccaggtggcggaggttacctcgctgggcctggtgcagatgacccgcaagcgg
gtgggccaggggctgctggagtcgttctccgagacctgtgtccactgcaacggccgcggt
gtgatcgtgcacatggagcagccggcggccgccggtggcggtggcggcaagcgcaggaag
cgcggccgcggcggtgccgagcacgtccacgagcacgaggtggtcgtcgaggcgccgggc
gccgaggccgcgccgagcgggctggaggagaccgaggccgaggtcgctgcggaggccgcg
gcgccgacggcgctgccggagcctgccttcgctcccgacgaggagctctacagcagcgca
gccgaggccgaggcggccgcctcccgccgcggccgccgccgggtgtcccgcaaggcgacg
gcaccggccggtgcgccgaggcagaccgagccggtcgagccggtcgagcctgtcgcggcc
ggggtggagcaggcagagccggtgccggccggggagaccgccgaggcggccgccgaaccg
gtggccgggccggaggccgtgcccgtcgaggcggagcaggcagagtcggcccccgcgggc
cgtacccgtcgccgggccacccgcaaggcgtcggctccggctggttccccgaagggcggc
gaggcggccgagatcgtgaccgagaccgccgaggtcccggccgaggcgcccgctgccgcg
gctcccggggctccggccgacgaggtccccgccgccgctccgccgcgggcccgtcgccgg
gtgacccgcaaggtcaccgctccggcgggttcgccgtccggcgcggaggacgccgcggtc
gtcgtggtcgtcgccccccaggagcccggggcggaggccgtgcccgccgaggcggaggag
ccggcggacgccccggcgaagaaggcggcccgcaagaccgccaagaaggccacggcgaag
aaggccgccacgaagaagacggcggccgagaagaccaccgcggccaagaaggcgactgcc
cagaaggcgaccgtcaagaagacggccgtcaagaaggcgaccgtcaagaagacggccgtc
aagaagacgaccgccaagaagacggccaagacggccgccgggaagaccgccgcggcggaa
cagcagagcctgccgaccgtgacggcgtcggcggaaagctga
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