Streptomyces spongiicola: DDQ41_12260
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Entry
DDQ41_12260 CDS
T06937
Name
(GenBank) very short patch repair endonuclease
KO
K07458
DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Organism
sspo
Streptomyces spongiicola
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_12260
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
DDQ41_12260
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Vsr
DUF559
MTES_1575
Motif
Other DBs
NCBI-ProteinID:
AWK09562
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Position
2825822..2826307
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AA seq
161 aa
AA seq
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MTKQLPQPDPAPWTPPEGSWASSAANRRSMLGNRNRDTSPERALRSLVHAAGLRYRVAAK
PLPCMRRTADMVFRPVRVAVFVDGCFWHGCPEHFVLPKTNPDYWRDKIGRNVQRDRDTDA
RLDEAGWLVLRFWEHESAEACSRAVYEAVAARRAALASGRS
NT seq
486 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcagctccctcagccggaccctgcgccctggacaccccccgagggctcctgg
gcgtcctccgctgcgaaccgccgaagcatgctcggcaaccgcaatcgcgacacctcacct
gaacgcgccttgcggtctctcgtccacgctgccggcctgcgctaccgcgtcgcagccaag
cctctgccatgcatgcgacgcaccgccgacatggtgttccgcccggtacgcgtcgccgtt
ttcgtcgacgggtgcttctggcacgggtgccccgagcactttgtgctgccgaagacgaat
cctgactactggcgcgacaagatcgggcgcaacgtccaacgcgatcgcgacacagacgcc
cgcctcgatgaagcaggctggctggtcctgaggttctgggagcacgaatcggcagaggcg
tgttcgcgggccgtctacgaagcagtcgcggcccggcgggcggctttggccagcggcagg
tcttga
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