Streptomyces spongiicola: DDQ41_13655
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Entry
DDQ41_13655 CDS
T06937
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DDQ41_13655
09124 Replication and repair
03420 Nucleotide excision repair
DDQ41_13655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspo03021
]
DDQ41_13655
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_13655
Enzymes [BR:
sspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDQ41_13655
Transcription machinery [BR:
sspo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DDQ41_13655
DNA repair and recombination proteins [BR:
sspo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DDQ41_13655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
ETAA1
IMD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWK09788
LinkDB
All DBs
Position
3132439..3134079
Genome browser
AA seq
546 aa
AA seq
DB search
MSCLIVQSDKTLLLEVDHEQADACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHD
AEQVVDALVEFSRYPVPHALLVDVAETMARYGRLTLVKHPTHGLVLSTTDRPVLEEVLRS
KRIQPLVGARLDPDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHRIDLDESGWAL
RPYQKQAVEGFWHGGSGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELV
RRTSLTEEEIGEYSGAKKEIRPVTIATYQVLTTRRKGVYPHLELFDSRDWGLIVYDEVHL
LPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPAD
CVEVRVSLTDSERLAYATAETEEKYRFCATTDTKRRVAEALVRRHAGQQILVIGQYIDQL
DELGEHLDAPVIKGETPNSQREKLFDAFRNGEISVLVVSKVANFSVDLPEATIAIQVSGT
FGSRQEEAQRLGRVLRPKADGHKAHFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIVDAD
DLAAEG
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctgcctgatcgtccagagcgacaagaccctcctgctcgaggtcgaccacgagcag
gccgacgcgtgccgccgtgccatcgcccccttcgccgagctggagcgcgcccccgagcac
atccacacctaccgggtcaccccgctcggcctgtggaacgcgcgggcggccggacacgac
gccgagcaggtcgtggacgcgctggtcgagttctcccgctaccccgtcccgcacgcgctg
ctcgtcgacgtggccgagacgatggcccggtacggccgcctcacgctcgtgaagcacccc
acccacggcctggtgctgtccacgaccgaccgccccgtgctggaggaggttctgcgctcc
aagcggatccagccgctggtcggcgcccggctcgacccggacacggtcgccgtgcacccc
tccgagcgcggccagatcaagcagacgctgctgaagctcggctggcccgccgaggacctc
gccggctacgtggacggcgaggcccaccgcatcgacctggacgagtccggctgggccctg
cgcccgtaccagaagcaggccgtcgagggcttctggcacggcggctcgggtgtcgtcgtg
ctcccctgcggcgcgggaaagaccctcgtcggcgccggggcgatggcccaggcgaaggcg
accacactcatcctggtcaccaacaccgtctccgcccgccagtggaagcacgagctggtc
aggcgcacctccctgaccgaggaggagatcggcgagtacagcggtgcgaagaaggagatc
cggccggtcaccatcgccacgtaccaggtgctcacgaccaggcggaagggcgtctacccg
cacctggagctgttcgactcccgcgactggggactgatcgtctacgacgaggtgcacctg
ctgcccgcaccggtcttcaagttcaccgcggaccttcaggcccgcaggcggctcggcctg
acggcgacgctggtgcgcgaggacggccgcgagtcggacgtcttctcgctcatcggcccg
aagcggttcgacgcgccctggaaggagatcgaggctcaggggtacatcgcgcccgccgac
tgcgtcgaggtgcgggtcagtctgacggactccgagcggctcgcgtacgcgaccgcggag
accgaggagaagtaccgcttctgcgccacgacggacaccaagcggagagtcgccgaagcg
ctcgtccgcaggcacgccggccagcagatcctggtcatcggccagtacatcgaccagctc
gacgaactcggcgagcacctggacgcgcccgtcatcaagggagagacgcccaactcccag
cgggagaagctcttcgacgcgttccggaacggcgagatctccgtgctggtcgtctccaag
gtcgcgaacttctcggtcgacctgccggaggccacgatcgccatccaggtgtcgggcacc
ttcggctcccgccaggaggaggcccagcgtctcggccgcgtgctgcgcccgaaggcggac
ggccacaaggcgcacttctactcggtggtggcccgcgacacgatcgaccaggacttcgcg
gcgcaccgccagcgcttcctcgcggaacagggatacgcgtaccggatcgtggacgcggac
gacctggcggccgagggctga
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