Streptomyces spongiicola: DDQ41_18285
Help
Entry
DDQ41_18285 CDS
T06937
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sspo
Streptomyces spongiicola
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspo03016
]
DDQ41_18285
Enzymes [BR:
sspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DDQ41_18285
Transfer RNA biogenesis [BR:
sspo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DDQ41_18285
Prokaryotic type
tRNA splicing ligases
DDQ41_18285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWK10518
UniProt:
A0A2S1Z3R1
LinkDB
All DBs
Position
4146302..4147558
Genome browser
AA seq
418 aa
AA seq
DB search
MSYVEVAGAKVPIRMWTDPAGVEDVAMQQLRNVATLPWIEGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSRIERAIPVGRGMHDDPVDPG
RVFGLPSAGFGDFWSRFDGIADPVRFRRERAARQLGTLGSGNHFIEFCLDESGSVWLMLH
SGSRNIGKELAEYHIGEARSLPHNRGLVDRDLAVFVSDTPQMAAYRNDLFWAQEYARYNR
AIMMGLFREVVRREFAKARVTFDSVVSCEQEDAEGRMRTEDCRPGVISCHHNYVSEERYE
GMDLLVTRKGAISAGSGEWGIIPGSMGTESYIVRGLGNPKSFNSASHGAGRRMSRNAAKR
RFSTRDLEEQTRGVECRKDSGVVDEIPAAYKPIGQVIDQQKDLVQVVAKLKQVICVKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtggaggtggccggcgccaaggtcccgatccggatgtggacggacccggcc
ggggtcgaggacgtcgccatgcagcagttgcggaacgtcgcgacgctgccctggatcgag
gggctcgccgtgatgcctgacgtgcactacggcaagggcgcgacggtcggttcggtcatc
gcgatgcgaggcgcggtgtgcccggcggcggtcggcgtcgacatcggctgcgggatgtcg
gccgtgaagacctcgctcaccgcgaacgacctgcccggcgatctctcccggctccgctcc
aggatcgagcgggcgatcccggtcgggcgtggaatgcacgacgacccggtcgatcccggg
cgggtgttcggactcccgtcggcggggttcggcgacttctggtcgcggttcgacggtatc
gccgatccggtcaggttccgccgggagcgcgcggccaggcagctggggacgctcggctcc
gggaaccacttcatcgagttctgcctcgacgagagcggatccgtctggctgatgctgcac
tccggctcgcggaacatcggcaaggaactcgccgagtaccacatcggcgaggcccggagc
ctgccgcacaaccggggcctggtcgaccgcgatctcgcggtgttcgtctcggacaccccg
cagatggctgcctaccggaacgacctcttctgggcgcaggagtacgccaggtacaaccgc
gcgatcatgatggggctgttccgggaggtcgtgcgcagggagttcgcgaaggccagggtc
accttcgactccgtcgtctcctgcgagcaggaggacgccgaaggccggatgcgcaccgag
gactgccgccccggtgtgatcagctgccaccacaactacgtcagcgaggagcgctacgag
gggatggatctgctggtcacccgcaagggagccatcagcgcgggctcgggggagtggggg
atcatccccggttcgatgggaacggagtcgtacatcgtccgcggcctgggcaacccgaag
tcgttcaactccgcctcgcacggtgccggccgcaggatgagccggaacgccgcgaagcgc
aggttctcgacgagggacctcgaggagcagacgcggggcgtcgagtgccgcaaggactcg
ggtgtggtggacgagatccccgctgcctacaagccgatcggccaggtgatcgaccagcag
aaggacctggtgcaggtcgtcgccaagctcaagcaggtcatctgcgtcaaggggtga
DBGET
integrated database retrieval system
