Streptomyces spongiicola: DDQ41_18820
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Entry
DDQ41_18820 CDS
T06937
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DDQ41_18820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspo03021
]
DDQ41_18820
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_18820
Enzymes [BR:
sspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DDQ41_18820
Transcription machinery [BR:
sspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DDQ41_18820
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DDQ41_18820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
TarH
Motif
Other DBs
NCBI-ProteinID:
AWK10610
UniProt:
A0A2S1Z2R5
LinkDB
All DBs
Position
4262012..4265920
Genome browser
AA seq
1302 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLEAD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVRGE
GRAFNSTAEAIMAFDARELSLQAKIDIRFPIGTVPPRGWTPPADEEGHEGIGPWQQGDSF
RLTTTLGRALFNELLPEDYPFVDYTVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFY
WATRSGVTVAISDVVVPEAKKDIVAGYEAQDEKVQKQYERGLITKDERTQELIAIWTKAT
NEVAEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFRE
GLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLRIA
ERGADGVLRKADDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVGAGVEEVKTR
SVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGD
DITQGLPRVVELFEARTPKGVAPISEVAGIVRVEETEKTKKIVITPDDGSDEAAYPISKR
AKLLVRDGDHVVVGQKLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHI
EIIIRQMLRRVTIIESGDAELLPGELVERSKFEHENRRVVQEGGHPASGRPQLMGITKAS
LATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLARYRNIRVEP
TEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgctgacgacatc
cgtcagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggccctacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgcgagcggatgggccatatcgagctggccgctccc
gtgacccacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgccgcgtacatgatcacgtacgtggac
gaggagcgccgcacccgcgacctgccctcgctggaggcccatgtctccgtcgagcgccag
cagatcgagaaccgccgcgacgccgacctggaggcccgcgccaagaagctcgaggccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttcgacggctcgatgggcgccgcggcg
ctgcagaagcgcctggagtccttcgacctggacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgcccgatggtccagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctgaagcgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcc
ctgttcgacaacggccgccgcggccgcccggtcaccggccccggcaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgggtggactactcggcgcgttccgtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggccctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggttctcggcctcttcttcctcaccacggacgaggaggagcgcgaggtgcgcggcgag
ggccgcgcgttcaactccaccgccgaggcgatcatggcgttcgacgcccgggagctctcg
ctccaggcgaagatcgacatccgcttcccgatcggcaccgtcccgccgcgcggctggacc
ccgccggcggacgaggaggggcacgagggcatcggcccctggcagcagggcgacagcttc
cgcctcaccaccaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccg
ttcgtcgactacaccgtcggcaagaagcagctctccgagatcgtcaacgacctcgccgag
cgctacccgaaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctac
tgggcgacccgctccggcgtcaccgtcgccatctcggacgtcgtcgtccccgaggcgaag
aaggacatcgtcgcgggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgc
ggtctgatcaccaaggacgagcgcacccaggagctcatcgcgatctggaccaaggcgacc
aacgaggtcgccgaggcgatgaacgacaacttcccgaagaccaaccccatcttcatgatg
gtcaactcgggtgcgcgcggaaacatgatgcagatgcgccagatcgccggtatgcgcggt
ctggtgtcgaacgccaagaacgagacgatcccccgtcccatcaaggcgtccttccgcgag
ggcctgtccgtgctggagtacttcatctccacccacggcgcccgaaagggtctcgccgac
accgccctgcgtacggccgactcgggttacctgacccgtcgtctggtcgacgtctcgcag
gacgtcatcatccgcgaggaggactgcggcaccgaccgcggtctgaagctgcggatcgcc
gagcggggcgccgacggtgtcctgcgcaaggcggacgacgtcgagacgtcggtgtacgcg
cggatgctcgccgaggacgtcgtcgtggacggcaaggtcatcgcgccggccaacgtcgac
ctcggtgacgtgctgatcgacgcgctcgtgggcgcgggcgtcgaggaggtcaagacccgc
tcggtcctgacctgcgagtccgccgtcggcacctgcgcgttctgctacggccgttcgctc
gccaccggcaagctggtcgacatcggcgaggcggtcggcatcatcgccgcccagtccatc
ggcgagcccggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgac
gacatcacccagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggt
gtcgccccgatctccgaggtcgccggcatcgtccgggtcgaggagaccgagaagaccaag
aagatcgtcatcactccggacgacggcagcgacgaggcggcgtacccgatctccaagcgc
gccaagctcctggtgcgggacggcgaccacgtcgtggtggggcagaagctcaccttcggt
gccaccaacccgcacgacgtgctgcggatcctcggccagcgcgccgtccaggtccacctg
gtcggcgaggtgcagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatc
gagatcatcatccggcagatgctgcgccgtgtgacgatcatcgagtccggtgacgcggag
ctgctgccgggcgagctggtggagcgctcgaagttcgagcacgagaaccgccgcgtggtc
caggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcctcg
ctggcgaccgagtcgtggctgtcggcggcgtccttccaggagacgaccagggtcctcacc
gacgcggcgatcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatcatc
ggtaagctcatcccggccggtacgggcctcgcccgctaccgcaacatccgggtcgagccg
accgaggaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcg
ccgttcggcaccggctccggccaggccgttccgctggaggactacgactacggtccgtac
aaccagtaa
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integrated database retrieval system
