Streptomyces spongiicola: DDQ41_20840
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Entry
DDQ41_20840 CDS
T06937
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DDQ41_20840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_20840
Enzymes [BR:
sspo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DDQ41_20840
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DDQ41_20840
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DDQ41_20840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7573
DZR
Auto_anti-p27
NFACT_N
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AWK10950
LinkDB
All DBs
Position
4730935..4731825
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AA seq
296 aa
AA seq
DB search
MPELPEVEVVRRGLERWVSGRTVGGVEVLHPRAVRRHIGGGSDFAARLLGWRIGTARRRG
KYLWLPLEDGAGAVLGHLGMSGQLLVRPEAAVDEKHLRIRIRFGDGLGTELRFVDQRTFG
GLSLHDTSPDGLPDAIAHIARDPLDPEFDDAAFHRAIRLRRTTVKRALLDQSLVSGIGNI
YADEALWRAALHYDRPTAGLTRARSAELLGHVRDVMNAALAVGGTSFDSLYVNVNGESGY
FDRSLDAYGREDEPCRRCGTAMRRRPWMNRSSYFCPRCQRPPRPSRRPRSLPHATS
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgcccgaggtggaagtcgtgcgccggggactcgagcgatgggtctcgggg
cggaccgtgggcggcgtggaggtcctgcacccgcgggccgtacgccggcacatcgggggc
gggagcgacttcgcggccaggctcctcggctggcggatcgggaccgcccggcggcgcggg
aagtacctgtggctaccgctggaggacggcgccggcgccgtcctgggacacctcgggatg
agcgggcaactgctggtccggccggaggcggccgtggacgagaagcacctgaggatccgg
atccgcttcggagacggcctcggcaccgaactccgcttcgtcgaccagcgcaccttcgga
ggtctgtcgctccacgacaccagcccggacgggctgcccgacgccatcgcccacatcgcc
cgggaccccctcgaccccgagttcgacgacgccgccttccaccgggcgatccggctgcgc
cggaccacggtcaagcgcgccctgctcgaccagtccctggtcagcggcatcggcaacatc
tacgccgacgaggccctgtggcgcgctgcgctccactacgaccggcccacggccggcctc
acccgtgcccggtctgccgaactcctcggccatgtaagggacgtgatgaacgccgccctc
gccgtcggaggtaccagcttcgacagcctctacgtcaacgtgaacggcgagtcgggctac
ttcgaccgctcgctcgacgcgtacggacgcgaggacgagccctgccgccgctgcggtacg
gcgatgcgccggcgcccctggatgaaccgctcgagctacttctgcccgcgctgccagcgc
ccaccgcggccgtcccggcggccgcgttcgctcccgcacgccacctcgtag
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