Streptomyces spongiicola: DDQ41_23215
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Entry
DDQ41_23215 CDS
T06937
Name
(GenBank) B/F/G family RNA polymerase sigma-70 factor
KO
K03090
RNA polymerase sigma-B factor
Organism
sspo
Streptomyces spongiicola
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspo03021
]
DDQ41_23215
Transcription machinery [BR:
sspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DDQ41_23215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_24
HTH_10
MarR_2
NirdL-like_HTH
HTH_3
DUF7343
HTH_AsnC-type
HTH_Crp_2
MarR
Sigma70_ECF
IF2_N
HTH_AraC
GerE
DUF4423
Motif
Other DBs
NCBI-ProteinID:
AWK11338
LinkDB
All DBs
Position
complement(5285988..5287010)
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AA seq
340 aa
AA seq
DB search
MRDGDGPVRDEERISGTRNGGPTAPAEPAGAPAGIPEQQARPHPVDERDGLPAAAEQKQA
GGGTSRARHWQRAAMSDHEHDLREHGHHAPNNRSEARSMFIALRGLPEGSPERAELRNQL
VRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVDRFDPDRGVEFSTYATPTVVGEI
KRHFRDKGWAVRVPRRLQELRLALTTATAELSQQYGRSPTVHELAERLGISEEEVLEGLE
SANAYSTLSLDVPDTDDESPAVADTLGAEDEALEGVEYRESLKPLLEDLPPREKRILLLR
FFGNMTQSQIAQEVGISQMHVSRLLARTLAQLREKLLVEE
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgagggacggggacggtccggtgcgcgacgaggagcggatttccggaacgcggaacggc
gggcccacggccccggcggagccggccggcgcgccggcgggcatcccggagcagcaggcc
aggccgcacccggtggacgagcgtgacggcctcccggccgcggcggagcagaagcaggct
gggggtggtacctcccgggcgaggcactggcagagggcggccatgagcgaccacgagcac
gacctcagggaacacgggcaccacgctccgaacaaccggagcgaggcgcgttcgatgttc
atcgcgctgcgcggacttccggagggctcccccgagcgtgccgaactccggaaccagctg
gtgcggatgcatctgcccctggtggagcacctggcccgccgcttccgcaaccgcggcgag
ccgctcgacgacctcacccaggtcgcgacgatcgggctgatcaagtccgtggaccggttc
gaccccgaccggggcgtcgagttctcgacctacgcgacgccgacggtcgtgggggagatc
aagcggcacttccgcgacaagggctgggcggtgcgggtcccccggcggctccaggagctg
cggctcgcactgaccacggcgaccgcggagctgtcccagcagtacggccgctcccccacg
gtccacgaactcgccgagcggctcggtatctccgaggaggaggtccttgagggcctggag
tccgccaacgcgtactcgacgctctcgctggacgtccccgacaccgacgacgagtccccg
gcggtcgccgacaccctgggtgccgaggacgaggcgctggagggcgtcgagtaccgcgag
tcgctgaagccgctgctggaggatctgccgccccgggagaagcggattctccttctccgg
ttcttcggcaacatgacgcagtcgcagatcgcccaggaggtcgggatctcccagatgcac
gtctcccgcctcctcgcgcgcacgctcgcacaactccgcgagaagctgctggtcgaggag
tga
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