Streptomyces spongiicola: DDQ41_24130
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Entry
DDQ41_24130 CDS
T06937
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDQ41_24130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspo03019
]
DDQ41_24130
03016 Transfer RNA biogenesis [BR:
sspo03016
]
DDQ41_24130
Enzymes [BR:
sspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DDQ41_24130
Messenger RNA biogenesis [BR:
sspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DDQ41_24130
Transfer RNA biogenesis [BR:
sspo03016
]
Prokaryotic type
tRNA degradation factors
DDQ41_24130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
PCB_OB
DUF2017
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AWK11487
UniProt:
A0A2S1Z548
LinkDB
All DBs
Position
5506097..5508322
Genome browser
AA seq
741 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKHPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQI
VETIMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALIDGRWVAFPTHSELENA
VFDMVVAGRVLEDGDVAIMMVEAEATEKTVELVKGGAEAPTEEVVAAGLEAAKPFIKVLC
KAQADLAAKAAKPTGEFPVFLEYQDDVLEALTAAVRSELTQALTVAGKQEREAELDRVKA
LAAEKLLPEFEGREKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLAVGAKVQVEIAEIDQRGKLSL
IPVVADEDGADEGEKKDDTDK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcatcgacaacggctccttcggcacccgt
acgatccgcttcgagacgggccgcctggccaagcaggccgccggctccgccgtcgcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcgtccaagcaccccaaggaccag
ctggacttcttccccctgacggtcgacgtcgaggagcggatgtacgccgcgggcaagatc
cccggctccttcttccgccgcgagggccggccgtccgaggacgcgatcctgacctgccgc
ctgatcgaccggccgctgcgcccgtccttcaggaagggcctgcgcaacgagatccagatc
gtcgagacgatcatggcgctcaaccccgaccacctgtacgacgtggtcgcgatcaacgcc
gcctcctgctccacgcagctggccggccttcccttctccggcccgatcggcggcacccgc
gtcgcgctgatcgacggccggtgggtcgccttcccgacccattcggagctggagaacgcc
gtgttcgacatggtggtcgccgggcgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagacggtggagctggtcaagggcggcgccgaggcgccg
accgaggaggtcgtcgccgccggcctcgaggccgcgaagcccttcatcaaggtcctgtgc
aaggcccaggcggacctcgccgcgaaggccgccaagccgaccggtgagttccccgtcttc
ctcgagtaccaggacgacgtcttggaggccctcaccgccgcggtcaggagcgagctcacc
caggcgctcaccgtcgccggcaagcaggagcgcgaagccgagctggaccgcgtgaaggcg
ctcgccgccgagaagctcctgccggagttcgagggccgcgagaaggagatctccgccgcg
taccgctcgctgaccaagtccctggtccgtgagcgcgtcatcaaggagaagaagcgcatc
gacggccgaggcgtgacggacatccgcacgctcgccgccgaggtcgaggccatcccgagg
gtgcacggctcggccctgttcgagcgcggtgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctttccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccgtcggcgagacgggccgcgtgggctccccg
aagcgccgcgagatcggccacggcgccctcgccgagcgcgccatcgtgccggtgctcccg
agccgcgaggagttcccttacgcgatccgccaggtgtccgaggccctcggctccaacggc
tcgacgtccatgggctccgtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggccccggtcgccgggatcgccatgggcctgatctcccaggagatcgacggccag
acgcactacgtcgccctcaccgacatcctcggcgcggaggacgccttcggcgacatggac
ttcaaggtggccggcaccaaggagttcgtcaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctgaagcaggcccgtgacgcgcgcctccac
atcctcgacgtgatgatggaagcgatcgacaccccggacgagatgtccccgaacgccccg
cggatcatcaccgtgaagatccccgtggacaagatcggcgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
accatctacatcggtgccgccgacggaccggccgcagaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcacggtcgtcaag
accaccaccttcggcgcgttcgtctccctgctcccgggcaaggacggcctgctgcacatc
tcgcagatccgcaagctggccggcggcaagcgcgtggagaacgtcgaggacgtgctcgcg
gtgggcgccaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctgtccctc
atccccgtggtcgcggacgaggacggcgccgacgagggcgagaagaaggacgacaccgac
aagtga
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