Streptomyces spongiicola: DDQ41_25910
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Entry
DDQ41_25910 CDS
T06937
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03420
Nucleotide excision repair
sspo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DDQ41_25910
03430 Mismatch repair
DDQ41_25910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_25910
Enzymes [BR:
sspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDQ41_25910
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDQ41_25910
MMR (mismatch excision repair)
Other MMR factors
DDQ41_25910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C
UvrD_C_2
AAA_11
Exc
Motif
Other DBs
NCBI-ProteinID:
AWK11783
LinkDB
All DBs
Position
5935113..5937008
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AA seq
631 aa
AA seq
DB search
MGGPEVHQARPRVAHGTGRDGDEGGRRVTTEAEDVTRTILTALREGRHFKVEAGAGAGKT
SSLIEALRSILADRARYLPRPHQRVACVTYTNVARDEIISRTDRSPYVFAETIHGFLWQL
LSPFRKHLLRHIVELDLMPSKMEGRTSLDGYTVEYSTGFQKVDHDTRQVRLGHNDLPVLA
RAFFALPKFRALAADRFPIVFVDEYQDTPDGLAEAMLGAPDDEATSRGPLCGFFGDHWQQ
IYENACGALEDTRPVQVFRRRNRRSQRAVVNFLNTMRPELTQTTAPEAGEGTVAIYHTNE
WAGTRLTHHRKGQIGWNAAHAARRWVLDDVRDRFWSTGASGPDEQGGAEEPSTKILMLTH
ETIAGELGYQKLHGAFRRNDSYVKKEDHAMAFFMDTLEPALLHHRNKRYGAMFDALDPRG
RPPINSSADKQEWMVFLTKLGEARKTGTVGDVLDLCLEQQLFDGLGKVRERHRKAVSPSG
TDPQAMSDDKAEARAAARTKEYQQLRKVPYAELLALNEHLGGGTPFATQHGVKGLEFNRV
LAVVSKGHSRFQIPEMLANFSRRDELVDKELEAFIRARNLFYVACSRAREHLAILFTTKL
QPASLDTLREWVGESRITSLRFDGDTVVGGE
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ctgggaggtcccgaagtacatcaggcgcggcctcgagtggctcatggcacaggacgggac
ggcgacgaaggcggacgacgagtgacgaccgaggcggaagacgtcacgcgcacgatcctg
acggccctccgggagggccgtcacttcaaggtggaggccggcgccggagcgggcaagacc
agctcactgatcgaggcgctccggagcatcctggccgaccgcgcccgctacctcccgcgg
ccccaccagcgcgtcgcgtgcgtcacctacaccaatgtggcccgcgacgaaatcatcagc
cgtaccgaccgcagtccttacgtgttcgccgagaccatccacggcttcctgtggcagttg
ctctcccctttccgtaagcacctgctacgccacatcgtcgagctggacctcatgccgtcg
aagatggagggccgtacctcgctggacggctacaccgtcgagtacagcaccggcttccag
aaagtggaccacgacacccgtcaggtgcggctggggcacaacgacctgcctgtcctcgcg
agggcgttcttcgctcttcccaaattccgggccctggccgccgaccggttcccgatcgtc
ttcgtggacgagtaccaggacacccccgacggcctggcggaggccatgctgggagctccg
gacgatgaggccacctcgcgcggccccctgtgcggcttcttcggggaccactggcagcag
atctacgagaacgcgtgcggggcactcgaggacacacgcccggtacaggtcttcagacgg
cgcaaccgccgttcgcagcgcgccgtcgtgaatttcctgaacacgatgcgtcccgaactg
acacagaccacggcgccagaagcgggcgagggcaccgtcgccatctatcacaccaacgag
tgggccgggacgaggctcacccaccaccggaagggccaaatcggctggaacgcggcccac
gcagcccggaggtgggtacttgacgacgtccgcgaccggttctggagcaccggggcatcc
gggcccgatgagcaggggggagcggaagagcccagcacgaagatcctcatgctcacgcac
gagacgatcgccggcgagctgggctatcagaagcttcacggggcatttcgacgcaacgat
tcctacgtgaagaaggaggaccacgccatggccttcttcatggatacgctggaaccggca
ctgctccaccaccggaacaagcgctacggcgcgatgttcgacgcactcgacccacgtggt
cgtccacccatcaactcgtcggctgacaagcaggaatggatggtgttcctgacgaaactg
ggggaggcccgtaagacgggcacggtcggcgacgtcctcgacctctgtcttgagcagcag
ctcttcgacggcctggggaaggtacgcgagcgtcaccgtaaggccgtgtcaccatccggc
accgacccgcaggctatgagtgacgacaaggccgaagcccgggccgcggcccggacgaag
gagtaccaacaactgcgcaaggtgccgtacgcggagttgctggcgttgaacgaacacctc
ggcggcggcacgcccttcgccacacaacacggagtcaagggactggagttcaaccgggtc
ctcgccgtggtcagcaagggacactcccgcttccagatccccgagatgctggccaacttc
tcccggcgcgacgaactggtggacaaggaactggaggcgttcatcagggcacgcaacctc
ttctacgtggcatgctcacgagccagagagcacctggccatcctcttcaccacgaaactc
cagcccgcctcactggacaccctccgggagtgggtcggcgagtcgcggatcacgtcgctg
cggttcgacggggacacggtggtgggtggcgagtga
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