Streptomyces spongiicola: DDQ41_29280
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Entry
DDQ41_29280 CDS
T06937
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DDQ41_29280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_29280
Enzymes [BR:
sspo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DDQ41_29280
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DDQ41_29280
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DDQ41_29280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AWK12333
LinkDB
All DBs
Position
6735501..6736364
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AA seq
287 aa
AA seq
DB search
MPELPEVEALRDFLDQHLTASEIARVMPVAISVLKTYDPPLGALDGSEVVSVRRHGKFLD
IGTGGGLHLVIHLARAGWLQWRDVLPSGVPRPGKGPLALRAALTGGDGFDLTEAGTTKRL
AVHLVRDPADVPGVARLGPDPLAGDFDRDSFAALLAGERRQIKGALRDQSLIAGIGNAYS
DEILHAARMSPYRLTSKLGAEEVTGLYEATRTTLQDAVERSRGLAAGRLKAEKKSGLRVH
GRTGEPCPVCGDTIREVSFHDSSLQYCPTCQTGGRPLADRRLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaggtggaagcgctcagggacttcctcgaccagcacctgacggcc
agtgagatcgcccgggtgatgcccgtggcgatcagcgtgctcaagacgtacgaccccccg
ctcggcgccctcgacggcagcgaggtggtctccgtgcggcggcacggcaagttcctggac
atcggcaccggcggcgggctgcacctcgtcatccatctggcgcgggcgggctggctgcag
tggagggacgtgctgccgtccggggtgccccgtccgggcaagggaccgctggcgctgcgc
gccgccctcaccggcggggacggcttcgacctgaccgaggcgggcacgacgaaacggctc
gccgtccacctcgtgcgcgacccggccgacgtgccgggcgtcgcccggctcggccccgac
cccctcgccggcgacttcgaccgcgactccttcgccgccctcctcgccggggaacgccgg
cagatcaagggcgcgctgcgcgaccagagcctcatcgccggaatcggcaacgcctacagc
gacgagatcctgcacgccgcgcggatgtcaccgtacagactcacctccaagctcggcgcg
gaggaggtcaccgggctgtacgaggccacgcgtacgacgctccaggacgccgtcgagcgc
tcacgagggctggccgccggccggctgaaggccgagaagaagagcggactgcgggtgcac
ggccgcaccggcgagccctgcccggtctgcggggacacgatccgcgaggtgtcgttccac
gactcgtccctgcagtactgccccacgtgccagaccggtggcaggccgctcgcggaccgg
aggctgtcgcggctgctcaagtga
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