Streptomyces spongiicola: DDQ41_29340
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Entry
DDQ41_29340 CDS
T06937
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
DDQ41_29340 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
sspo01007
]
DDQ41_29340 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspo03016
]
DDQ41_29340 (lysS)
Enzymes [BR:
sspo01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
DDQ41_29340 (lysS)
Amino acid related enzymes [BR:
sspo01007
]
Aminoacyl-tRNA synthetase
Class II (A)
DDQ41_29340 (lysS)
Transfer RNA biogenesis [BR:
sspo03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
DDQ41_29340 (lysS)
Prokaryotic type
Other AARSs
DDQ41_29340 (lysS)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LPG_synthase_C
tRNA-synt_2
tRNA-synt_2_TM
tRNA_anti-codon
tRNA-synt_2d
Acetyltransf_1
Motif
Other DBs
NCBI-ProteinID:
AWK12344
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All DBs
Position
6746121..6749432
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AA seq
1103 aa
AA seq
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MSVSAAERGTGARSGLAARVPGAFAMFFALLGVYCVVIALIAPLRRLLNPVSAFLDLVAV
PVSANLAYAVFLLLLAAAIGARKKAAWWLVVAYLALLVLTDVLTLVLLRDWSWIPNLVLC
LIALGVLFAARGEFYALTRRGALRLALLVLVLGLVLAVLVGWALVEMFPNDLPQGQRLVW
AANRVLGGLVSNARFDGTPPRALFFLLGLFGALALLNSARTLFRSQRMEAALHGDEEPRI
RALLAAYGSQDSLGYFATRRDKAVVFPPNGKAAVTYRVEAGVALASGDPVGDTEAWTPAI
ETWLDVARRHAWAPAVMGASEDGARAYARSGLGAIQLGDEAILYVERFDLNGRDMRVTRQ
AVGRVRRLGAATRIRRHSALGAGEMKEVIDRADAWRDTETERGFSMALDRLGDPEDGDCL
LVEALDADGNLIALLSFVPWGHDGISLDVMRRDRDHAPNGIMEFMVAELCAEAPQLGVRR
ISLNFAVFRSVFEEGARIGAGPVLRLWRRLLLFFSRWWQLEALYRSNVKYRPVWYPRFLC
YADAGALARIGLASAIAEGFVSVPRLGRRWGGGRPRGAVAGPVAGTKDLPPLDTLGLAGP
DTVRPMGERRMPEQVRIRHRKLERLRARGVDPYPAGVTARTGPLAAVRAAHPDLPAGART
GERVTVAGRVMAVRDFGGVVFAVLRDWSGDLQIALTRDGSGPDVLSAFSSDVDLGDHVTA
TGEVGASDRGELSVFADAWQLTAKCLRPLPDKRRGLADPEARVRRRYLDLVTSPDARGVV
RARSTAVQALRQGLLDRGYLEVETPMLQQVHGGANARPFTTHINAYDMNLYLRIAPELFL
KRLCVGGMEKVFEMGRTFRNEGVSYKHNPEFTMLEAYQAFADYDVMLDLARELIQGAAVA
AFGAPVAHTRGPDGTLAVHDISGTWPVRTLYGAVSEALGEQVDADTGEQRLRSLCDLAGV
PHGPDDTRGDVVLEMYERLVEEKTRLPTFYKDFPTDVSPLTRRHRRDPRLAERWDLVAFG
IELGTAYTELTDPVEQRRRLTAQSLLAAGGDPEAMELDEDFLDALEYAMPPTGGLGIGVD
RLVMFLTGLTIRETLPFPLVRRH
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcagcgcggcggagcgtgggacaggcgcccggagcggtctcgcggccagggtg
ccgggcgccttcgcgatgttcttcgccctgctcggggtgtactgcgtggtgatcgcgctc
atcgcccccttgcggagactgctgaacccggtctccgcgttcctcgacctggtggccgtg
cccgtcagcgccaacctggcgtacgcggtcttcctgctgctgctggcagcggcgatcggc
gcccgcaagaaggccgcgtggtggcttgtcgtcgcctacctcgccctgctggtcctcacc
gacgtcctcaccctggtgctgctgcgggactggtcctggatccccaacctcgtcctgtgc
ctgatcgccctcggggtgctcttcgccgcccgcggtgagttctacgccctgacccgccgc
ggcgccctgcggctcgccctcctcgtgctcgtcctcgggctcgtgctggccgtcctcgtc
ggctgggcgctcgtggagatgttccccaacgacctcccgcagggacagcggctggtgtgg
gccgccaaccgggtgctcggcgggctcgtctccaacgcccggttcgacggcaccccgccc
cgcgccctcttcttcctcctcggcctcttcggcgcgctcgcgctgctcaactccgcccgg
acgctgttccgctcccagcggatggaggccgctctacacggcgacgaggagccccggatc
agggccctgctcgccgcctacggctcccaggactcgctcggctacttcgccacccgccgc
gacaaggccgtcgtgttcccgcccaacggcaaggccgccgtcacctaccgcgtcgaggcg
ggtgtggccctcgccagcggggacccggtcggggacacggaggcgtggacccccgccatc
gagacctggctggacgtcgcccgccgccacgcctgggcgcccgccgtgatgggcgcctcc
gaggacggcgcacgtgcctacgcccgctccgggctcggcgccatccagctcggggacgag
gcgatcctgtacgtcgagcgcttcgacctgaacggccgggacatgcgcgtcacccggcag
gccgtcggccgggtccgcaggctcggggcggccacccgcatccgccgccactccgccctc
ggcgccggggagatgaaggaggtcatcgaccgggccgacgcctggcgcgacaccgagacc
gagcgcggcttctccatggccctggaccggctcggcgaccccgaggacggcgactgcctg
ctggtggaggccctcgacgccgacgggaacctcatcgccctcctctccttcgtgccctgg
ggacacgacgggatctccctcgacgtgatgcgccgggaccgcgaccacgcgcccaacggg
atcatggagttcatggtcgccgagctgtgcgcggaggccccgcagctcggcgtgcgccgg
atctccctcaacttcgccgtcttccgctccgtgttcgaggagggcgccaggatcggcgcg
ggtccggtcctccggctctggcgccggctgctcctgttcttctccagatggtggcagctg
gaggcgctgtaccgctccaacgtcaagtaccggcccgtctggtacccgcgcttcctctgc
tacgcggacgccggcgcgctcgcccgcatcggtctcgcctccgcgatcgccgagggcttc
gtttccgtaccccggctgggcaggcgctggggcggcggccggccgcgcggagccgtcgcc
ggaccggtcgcgggcaccaaggacctcccgccgctcgacacgctcggactcgccggaccc
gacaccgtacggcccatgggggagcgccggatgccggagcaggtacgcatccgccaccgc
aagctcgaacgcctgcgcgcgcggggtgtcgacccgtacccggccggcgtcaccgcgcgc
accggccccctcgccgccgtacgagccgcccaccccgacctgccggccggagcccgcacg
ggcgaacgggtcacggtcgccgggcgggtcatggccgtacgcgacttcggcggagtcgtc
ttcgcggtgctgcgcgactggtccggcgacctccagatcgccctgacccgcgacggttcc
ggccccgatgtgctctccgccttctcgtcggacgtcgacctcggcgaccacgtcaccgcc
accggcgaggtcggtgccagtgaccggggtgaactcagcgtcttcgccgacgcctggcag
ctcaccgccaagtgcctgcgcccgctgcccgacaagcgccgcgggctggctgacccggag
gcacgggtccgccgccgctatctcgacctggtcaccagtcccgacgcccgcggtgtcgtc
cgggcccgctccaccgcggtccaggcactgcggcaggggctgctcgaccgcggctatctc
gaggtcgagaccccgatgctccagcaggtccacggcggtgccaacgcccgtccgttcacc
acgcacatcaacgcctacgacatgaacctgtatctgcggatcgcgccggagctgttcctc
aagaggctgtgcgtgggcggcatggagaaggtcttcgagatgggacgcaccttccgcaac
gagggcgtgtcgtacaagcacaaccccgagttcacgatgctggaggcctatcaggctttc
gccgactacgacgtgatgctcgatctggcccgcgaactgatccagggcgccgccgtcgcc
gcgttcggcgcgcccgtcgcccacacgaggggccccgacggcacgctcgccgtccacgac
atctccggtacctggcccgtcaggacgttgtacggagcggtgtccgaggcgctcggcgag
caggtcgacgccgacaccggcgagcagcggctgcgcagcctctgcgacctcgcgggagtg
ccgcacggtcccgacgacacccgcggtgacgtcgtcctggagatgtacgagcggctggtc
gaggagaagacccggctgcccaccttctacaaggacttcccgacggacgtgtctccgctg
acccgccggcaccgccgtgatccgcgcctcgccgagcgctgggacctcgtcgccttcggt
atcgaactgggtaccgcatacacggagttgaccgatccggtcgagcagcggcgacgtctc
accgcccagtcgctgctcgcggccggcggggaccccgaggccatggaactcgacgaggac
ttcctcgacgcgctggagtacgccatgccgccgaccggcgggctcggcatcggcgtggac
cggctggtgatgttcctgacggggctgacgatccgcgagaccctgccgttccccctggtg
cgccgacactga
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