Streptococcus suis D9 (serotype 7): SSUD9_0167
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Entry
SSUD9_0167 CDS
T02022
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssq
Streptococcus suis D9 (serotype 7)
Pathway
ssq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSUD9_0167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssq03019
]
SSUD9_0167
Messenger RNA biogenesis [BR:
ssq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSUD9_0167
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
pre-PUA_NIP7
DUF4453
SocB
Motif
Other DBs
NCBI-ProteinID:
AER16441
LinkDB
All DBs
Position
complement(154031..155710)
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AA seq
559 aa
AA seq
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MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKFPEDDLLGIDYVIPDYS
YIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDAT
LHEINHNTELTFKHLKVSFFRTTHSIPEPLGIVVDTPQGKIVCTGDFKFDFTPVGEPADL
HRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKLIEGIHGRIIFASFASNIFRL
QQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKDTFIEPNEIKEYPASEIMILCT
GSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSSPIPGNTTGVNKLINILIEAGVDVIHG
KINNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKIHASLAVDTGVPKDNIFIMEN
GDVLALTKDSARLAGQFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFNSK
MILAGPDILSRGFIYMRESGELIRESQRVLFNAIRIAMRNKDANIQTVNGAIVNALRPFL
YEKTEREPIIIPMILTPDR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagtcaatctaaaacctcatgaagttggcgttttcgccatcggtggtttggga
gaaatcgggaaaaatacctacggtatcgagtataaggatgaaattctcatcgtcgatgcc
ggtatcaagttcccagaagatgacctattgggtatcgactacgttatcccagactactcc
tacatcgttgaaaacctagaccgtgttaaaggtctggttattacccacgggcacgaagac
cacatcggaggcattcccttcttactcaagcaggccaatgtcccaatctatgctggacct
ttagcccttgcccttattcgaggcaaattggaagaacacggactgctccgtgatgcgact
ttgcatgaaatcaatcataatactgagttgaccttcaaacacctcaaggtcagcttcttc
cgcaccacccactccattccagaaccacttggtatcgtcgttgacaccccgcaaggaaaa
atcgtctgcaccggtgacttcaagttcgacttcactccagttggcgagccagcagacctt
caccgcatggctgccctcggtgaagaaggcgttctctgcctcctctccgactcgacaaat
gctgaggtcccaacctttaccaactcggaaaaagtggtcggtcagtccattatgaagctg
attgaaggcattcacggacgcatcatttttgcttcctttgcctccaacatcttccgtctc
caacaggcggctgatgcagcggttaagaccggacgcaagatcgctgtctttggacgttcc
atggaaaaagccattgttaacggtatcgagctcggctacatcaaggttccaaaagacacc
tttatcgagccaaacgagatcaaagagtatcctgccagcgagatcatgattctctgtaca
gggagccaaggggagcctatggcagcactctctcgcatcgcccacggtacccaccgtcag
gtgcaactccagccaggcgacacggttatcttctcgtccagtcctattccgggaaatacc
acaggtgtcaacaagctcatcaatatcttaattgaagccggtgtcgatgttattcacggc
aagatcaacaacatccatacctctggacacggtggtcaacaagagcaaaaactcatgctc
cgcctaatcaagccaaaatacttcatgcccgtccatggtgaataccgcatgcaaaaaatt
catgccagcctagctgttgatacaggcgttccaaaagataatatcttcatcatggaaaac
ggagatgtccttgctctgacaaaagattctgcacgtctcgcaggtcaattcaacgcccaa
gacatctatgttgatggaaaccgcatcggtgaaatcggcgcagctgttctaaaagaccgt
cgcgatctttcagaagatggtgttgtccttgcagtagccactgtcgattttaattctaag
atgatattagcaggaccagacatcctcagccgtggcttcatctatatgagagaatctggc
gagctcattcgcgaaagccaacgcgtccttttcaacgctatccgcatcgccatgcgcaat
aaagatgccaatatccaaacagtcaacggcgccattgttaacgccctacgaccattccta
tacgaaaaaacagagcgtgaaccaatcattatcccaatgattctgacgcctgaccgataa
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