Streptococcus suis D9 (serotype 7): SSUD9_0439
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Entry
SSUD9_0439 CDS
T02022
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ssq
Streptococcus suis D9 (serotype 7)
Pathway
ssq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSUD9_0439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssq03019
]
SSUD9_0439
Messenger RNA biogenesis [BR:
ssq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSUD9_0439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
DivIVA
ATP-synt_B
KH_KhpA-B
dUTPase
LapA_dom
Motif
Other DBs
NCBI-ProteinID:
AER16688
LinkDB
All DBs
Position
420358..421971
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AA seq
537 aa
AA seq
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MEIITVVVTLVSALIGLVLGYFAISLKMKSAKETAELTLLNAEQEASNVRGRAEEQAEVI
LKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQELKQIESRLTERATSLDRKDD
NLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKLEEQKALELERVAALSQEEAKEIILTDT
RDKLTHEIATRIKEAEREVKERSDKMAKDLLAQAMQRISGEYVAEQTITSVHLPDDAMKG
RIIGREGRNIRTFESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTMETLLQDGRIHPAR
IEELVEKHRVEMDNRIREYGEAAAYEVGAPNLHPDLIKIMGRLHFRTSYGQNVLRHSIEV
AKLAGVLAAELGENVNLARRAGFLHDVGKAIDREVDGSHVEIGTELAKKYKENPIVINAI
ASHHGDVEATSTIAVIVAAADALSAARPGSRRESMEAYIKRLQDLEEIANSFEGIKQSYA
IQAGREIRIIVHPNKVTDDQITILAHDVREKIENNLDYPGNIKITVIRETRATDVAK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcattacagttgtagtgactcttgtttctgctctcattggtttagtattaggt
tactttgccatttctttgaagatgaaatctgcaaaagaaactgcagaattgacactttta
aacgcagaacaagaagctagtaatgttcgtggtcgagcagaagagcaagctgaggttatt
ctaaaaacagctgagcgcgatcgccagaccttgaaaaaagaattactcttggaagctaag
gaagaagctcgtaagtaccgagaagaaattgcagaagaatttaagtcagaacgtcaagag
ttgaagcaaatcgaatcacgcttgacagagcgtgcgaccagcttggaccgcaaagacgat
aatttgaccaacaaggaaaagactttggaacaaaaggaacaaagtctgaccgataaagct
aagcacattgatgagcgtgaacaagaagttgtaaaactcgaagaacaaaaagctttggag
ttagaacgagtggcggccctcagtcaagaagaggcgaaggaaattatccttaccgataca
cgcgataaactgacgcatgaaattgcgactcgtatcaaggaagcagagcgtgaagtaaaa
gagcgttctgacaagatggcaaaggacttgttagcccaagcgatgcaacgcatatcaggt
gaatatgtggctgagcagacgattacatcggttcatttaccggatgatgcgatgaaggga
cggattattggacgtgagggtcgaaatattcgtacctttgaaagtctcacaggtatcgat
gttatcattgatgatacaccagaagtggttgttctatcaggttttgatccgattcgccgt
gagattgcccgtatgaccatggagaccttgcttcaagatggtcgtattcatccagctcgt
attgaggagttggttgagaaacaccgtgtagagatggataaccgtattcgtgagtatggg
gaagctgctgcttatgaagttggggcaccaaaccttcatccagacttgattaaaatcatg
ggacgtttgcatttccgtacctcttatggacaaaatgttcttcgccactcaatcgaagtt
gctaaattagcaggtgtacttgctgctgaattgggcgagaatgtgaatttggcacggcga
gctggtttcctacatgacgttggtaaagctattgaccgtgaggtggatggaagccacgtt
gaaatcggtacagaattggctaagaaatataaagagaatccaattgttatcaatgcgatt
gctagtcaccatggcgatgtagaagcgacaagtactattgcagtcattgtggctgcggca
gatgctctgagcgctgctcgtccaggttcgcgtcgtgaatctatggaagcctacatcaaa
cgtctgcaagacttggaagaaatcgccaacagttttgaagggattaaacaatcctatgct
attcaggctggtcgtgaaattcggattatcgttcatcctaataaggtcactgatgatcag
attaccatcttggcccatgatgttcgtgagaaaattgaaaataatctggattatccagga
aatatcaaaatcacagttatccgtgaaacaagagcgacagatgttgctaagtaa
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