Streptococcus suis D9 (serotype 7): SSUD9_0588
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Entry
SSUD9_0588 CDS
T02022
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssq
Streptococcus suis D9 (serotype 7)
Pathway
ssq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SSUD9_0588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssq03400
]
SSUD9_0588
Enzymes [BR:
ssq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SSUD9_0588
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SSUD9_0588
DNA repair and recombination proteins [BR:
ssq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SSUD9_0588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Zn_ribbon_6
Auto_anti-p27
DUF4862
Motif
Other DBs
NCBI-ProteinID:
AER16825
LinkDB
All DBs
Position
570975..571868
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AA seq
297 aa
AA seq
DB search
MCKSHSVALLIFSRFLRSWYRTLPELPEVETVRRGLNRLVKGKIISKVEVTYAPMIKTGV
DAFCQDLIGQEILDVDRRGKYLLIYLTDHVLISHLRMEGKYNFFPDQVPANKHFHAFFTF
SDGSTLVYQDVRKFGTMELLGKADVDAYFISRKIGPEPTEEDFDLEEFAKKLAKSRKPIK
SHLLDQSLVAGLGNIYVDEVLFKAKVHPAQTSNQLSAEQVADLRQATIEVLQLGIEKGGS
TIRTYKNALGMDGTMQDYLQVYGKTGQACPRCQTEIVKIQLGGRGTHFCPKCQVKHG
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcaagtcacacagcgtcgctctcctaattttcagtcgctttttacgctcttggtat
cgtacattgcccgaattgcctgaggttgagacggttcgtcgtggtttgaatcgtttggtc
aagggaaaaattatttccaaggtggaggtgacctatgctcccatgattaagacaggtgtg
gatgccttctgtcaggacttgattggtcaggagattttagatgtggaccgtcgtggcaag
tatctcttgatttacctgacagaccatgtcctcatttctcatttgcggatggaaggtaag
tacaatttctttcctgaccaggtgcctgccaacaaacatttccatgccttttttactttt
tcagatggctcgaccttggtctatcaagatgtccgcaagtttggcacaatggaactgctg
ggcaaggcagatgtggatgcctattttatcagtcgaaaaattggtcctgagccgacggag
gaagattttgacttagaagaatttgccaaaaagttagctaagtcgagaaaacccattaag
tcgcatcttttggaccagtctttggtggctggtttgggcaatatttatgtcgatgaggtc
ttgttcaaggccaaagttcatcctgcacaaacgagtaatcagctatcagcagagcaggtg
gcagatctccgccaagctaccatagaagttctacaactgggaattgaaaaaggtggttca
accattcggacttacaaaaatgccttgggcatggatgggactatgcaggattatttacaa
gtttacggaaagacagggcaggcctgtccccgttgccagacagagattgtcaaaatccag
ctgggcggacgggggacacatttctgtcccaagtgtcaggtgaaacatggctaa
DBGET
integrated database retrieval system
