Streptococcus suis D9 (serotype 7): SSUD9_0592
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Entry
SSUD9_0592 CDS
T02022
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssq
Streptococcus suis D9 (serotype 7)
Pathway
ssq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSUD9_0592 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssq03019
]
SSUD9_0592 (rnr)
03016 Transfer RNA biogenesis [BR:
ssq03016
]
SSUD9_0592 (rnr)
Enzymes [BR:
ssq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SSUD9_0592 (rnr)
Messenger RNA biogenesis [BR:
ssq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSUD9_0592 (rnr)
Transfer RNA biogenesis [BR:
ssq03016
]
Prokaryotic type
tRNA degradation factors
SSUD9_0592 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
RNase_II_C_S1
CSD
OB_PDCD11
FaeA
Motif
Other DBs
NCBI-ProteinID:
AER16829
LinkDB
All DBs
Position
574515..576884
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AA seq
789 aa
AA seq
DB search
MKNDIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPA
PKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNFAIEGDRVEIAIKKVADRL
KGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV
PESPSEQDFAGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE
GSALDQEAIKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDRKGKVVKH
WIGQTVIKTNFRMTYSDVNDMIAGNQEKLDKYKTIVPSVELMVKLHETLETMRYKRGALN
FDTAEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLVANECVAEHFAKLDLPFIYRIHEE
PKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVRDYGHNPAEKAEHFEQVIPELAKSS
SSLERRAIEAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHITNL
NEYYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEIDFAHVPSELDIVEKALKA
KRRTASHSNRDRDDRSGRGRGKHHKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEV
AKKNKKKRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgatattattaactatattaaagaagttggtcctgtgaccatggaccagctg
gcagatcagtttggagccagttctgctaagagctttacagacttggtcaagctggtttct
agcatggaaggcagtcgtcaacttgtctttgacaatgctgggcggattactcttcctgct
ccaaaaatctccaagaacaaggtgaccttacagggtattttccgtgcccacaagtcgggt
tttggctttgtgaccattgacgaggaggaagatgatctctttgtcagccgtgacgatgtt
aactttgctatcgaaggtgacagagttgaaattgcaatcaaaaaggttgcagatcgtctc
aagggaactgccgcggaagcggaagtcattgatattttggaacatagcctgaaaacagcg
gtgggcttgattgtctttgacgaagataagccagaatatgcaggctacatcaagtctaaa
aaccagaaaattgctcagaagatttacatcaagaagtcacctctggtattgaccggaacg
gaaatcctaaaagttgatatcgaagcttatccaaacaagaaacgggaccactttgttgcg
accattcgggacgtggtgggccacaaggacgatgtgggcatcgatgtcttggaagttttg
gagtccatggatatcgtgtcggagtttccagatgaagtcttggcagaggccaatcgggta
ccagaaagtccgtctgaacaggactttgcaggacgtttggacctgcgagatgaaattatc
ttcaccatagacggtgcggatgccaaggacttggacgatgcggtccatatcaagcagctt
aagaacggcaatctggagctaggtgtccatatcgctgatgtcagctactatgtgacggaa
ggctctgccttggatcaagaggccatcaagcgtggaacgtctgtctatgtgaccgaccgt
gtggtgccaatgttgccagaacgtttgtcaaacggcatctgctctcttaatccaaacgtg
gaccgtctaacccagtcggctattatggaaattgaccgcaagggcaaggttgtcaagcac
tggattggccaaacggtcatcaaaaccaacttccgcatgacctattctgatgtcaatgac
atgattgcgggaaatcaggaaaagctggacaaatacaagacaatcgtgccaagtgttgag
ctcatggtcaaactccatgaaaccctggaaaccatgcgctacaagcgtggggctctcaac
tttgatacagctgaagctaaaatcatcgtcaacaaggatggtctgccagtcgatatccag
ctacgtcagcgaggcattgctgagcggatgattgagtccttcatgctggttgccaatgag
tgcgttgctgagcattttgccaaactggacctgcctttcatctatcggatccacgaggag
cctaagtcagacaagctgcaaaagttcatcgactatgcgaccagctttggtctgacggtc
tatggtacggccagctctatcagccaggacgcccttcaggacctcatggagcgggtcaag
gatgaaccctatgcggatgtcctcaacatgatgttgctgcgttctatgcagcaggcacgc
tactcggagcacaaccacggccattacggtctgggtgccgagttctacacccactttacc
agccctatccgtcgttatcccgacttgctggttcaccgcatggtgcgggactatggtcat
aatcctgcggaaaaagcagagcattttgagcaggttatacctgagcttgccaagtcttcg
tccagtttagaacgccgtgccattgaggcagagcgggaagtcgaagccatgaagaaggca
gagttcatgcaagaatttgttgggcaagagtttgatggtgtcgtatctagcgtagtcaag
tttggtctttttgtagagttaccaaacacggttgaaggcctgattcatatcaccaacctc
aacgaatactatcagttccacgagcgaactctgaccttgcagggtgagaaatcaggtcgg
gtcttccgtgtcggtcagccaattcgtatcaagctaacgcgggcggacaagatgacaggg
gaaatcgattttgcccacgtgccgtccgagctggatattgtcgaaaaagctctgaaagcc
aaacggagaactgctagtcactctaaccgtgaccgtgatgatcggtcagggcgaggacgg
ggcaagcaccacaaacaagaagctgctggtcgcgacagcggacgtcacaagtctggaaaa
gaccacaagtcaaaaagtggcaaaaaagacaagaaaaagaaaccattttacaaagaagtg
gctaaaaagaacaagaagaaaaggagatag
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integrated database retrieval system
