Streptococcus salivarius CCHSS3: SALIVB_1184
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Entry
SALIVB_1184 CDS
T01580
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssr
Streptococcus salivarius CCHSS3
Pathway
ssr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALIVB_1184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssr03019
]
SALIVB_1184
Messenger RNA biogenesis [BR:
ssr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SALIVB_1184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Regulator_TrmB
ODP
Motif
Other DBs
NCBI-ProteinID:
CCB93467
LinkDB
All DBs
Position
complement(1279641..1281302)
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AA seq
553 aa
AA seq
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MSDIKIIALGGVRENAKNLYIVEINDSIFILDAGLKYPENEQLGVDFVIPNLDYLIENRD
RIQGIFLTHGHADAIGALPYILQEVKAPVFGSSLTIELAKLFVKNAGVKKFNNFHVIDAE
TEIEFEDAEVSFFKTTHSIPESMGIVLGTDQGNIVYTGDFKFDQAARPYYKTDLGRLAEI
GREGVLALLSDSANATSTEQTASEAEVGQEIDQVIADAEGRVIVAAVASNLVRIQQVFDS
AADHGRRVVLTGFDVENIVRTAIRLKKLTVEHEKLIVKPKDMNKFEDHELIILENGRMGE
PIDGLQKMAVGRHRYVQIKDGDLVYIVTTPSIAKEAVVARVNNAIYKAGGTVKMITQSLR
VSGHANARELQLMINLLRPQYLFPVQGEYRDLQAHAELALEVGILPENIYIVKRGDIMHL
SEDQGFLHEGAVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNKKERKIVSK
ARVNTRGFVYVKKSRDILREAADIVNATVENYLAGDSFDWGELKGAVRDDVAKFLFDQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatattaaaattattgccctaggtggagtacgtgaaaatgctaagaacctctat
attgttgagattaacgactctatctttatcttggatgctggtctaaagtatcctgaaaat
gaacaactaggtgttgactttgtcatccctaacttagattacttgattgaaaatagagat
cgtatccaagggattttcttaactcacggacacgctgatgccattggtgccctaccttat
attttgcaagaagtcaaagcaccagtctttggatcatcacttacaatcgagttagctaaa
ctttttgtcaagaatgctggtgttaagaaattcaacaatttccatgttattgacgcagaa
actgaaatcgaatttgaggatgctgaggtttcattcttcaaaacaactcactcaattcca
gaatcaatggggattgttcttggtactgaccaaggaaatattgtctatacaggtgacttc
aagtttgatcaagctgcccgtccttactacaaaactgatttaggtcgtttggctgaaatc
ggacgtgaaggtgttttggccctcttgtcagactcagcaaatgcgacaagtacggaacaa
acagcttctgaagcagaagttggccaagaaattgaccaagtaattgctgatgcagaagga
cgtgttattgttgctgcagttgcctcaaacttggtacgtattcaacaagtctttgattca
gctgctgatcacggacgtcgcgttgttcttactggttttgacgtagaaaatattgtccgc
acagccatccgtcttaaaaaattgactgtggagcatgaaaaacttattgtcaaaccaaaa
gacatgaacaagttcgaagaccacgagttgattatcctcgaaaatggtcgtatgggtgaa
ccaattgatggccttcaaaagatggctgttggtcgtcaccgttacgttcaaatcaaggat
ggagatttggtttatatcgtaacaactccaagcattgctaaggaagccgtagtggcacgt
gtcaacaacgctatctataaagctggtggaactgttaagatgattacgcagagccttcgt
gtatctggacatgccaatgctcgtgaacttcagttgatgattaaccttcttcgtccacag
tatctcttccctgttcaaggggagtaccgtgaccttcaagcacatgcagagttagccttg
gaagttggtattcttccagaaaatatttatatcgttaaacgcggtgacatcatgcaccta
tcagaggaccaaggtttccttcatgaaggagctgttccagctggtgatgttatgattgac
ggtaatgccattggtgatgtgggtaatatcgtccttcgtgaccgtaaggtcttgtctgaa
gacggtatctttatcgtagctatcactgttaacaagaaggaacgtaagattgtctctaaa
gcgcgtgtgaatacacgtgggttcgtttatgtgaagaagagccgtgacattctccgtgag
gctgctgacattgtcaatgctaccgttgaaaattacttggcaggagacagtttcgactgg
ggtgaacttaaaggagccgtccgcgacgatgtggctaagttcctctttgaccaaaccaaa
cgtcgcccagctatccttccagtagttatggaagtccgctaa
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