Streptococcus salivarius CCHSS3: SALIVB_1808
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Entry
SALIVB_1808 CDS
T01580
Symbol
yqfR
Name
(GenBank) putative ATP-dependent RNA helicase yqfR
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ssr
Streptococcus salivarius CCHSS3
Brite
KEGG Orthology (KO) [BR:
ssr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssr03019
]
SALIVB_1808 (yqfR)
03009 Ribosome biogenesis [BR:
ssr03009
]
SALIVB_1808 (yqfR)
Enzymes [BR:
ssr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SALIVB_1808 (yqfR)
Messenger RNA biogenesis [BR:
ssr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SALIVB_1808 (yqfR)
Ribosome biogenesis [BR:
ssr03009
]
Prokaryotic type
rRNA helicases
SALIVB_1808 (yqfR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
CCB94066
LinkDB
All DBs
Position
complement(1889976..1891319)
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AA seq
447 aa
AA seq
DB search
MSFKDFNFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF
EKLNPKSGDVQVVITAPSRELATQIYQATKQIAKHSDTEIRVVNYVGGTDKQRQIEKLKV
AQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKEVQI
LVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILEMLKGM
QPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD
LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELEKM
GITFEPKVYKDGEFQDTYDRDRRANREKAYQKLDTEMIGLVKKKKKKIKPGYKKKIQWKV
DEKRKRERRAANRAKGRAERKAKKQSF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagattttaattttaaaacatttattcaggaggctcttgatgagattaag
tttaaggagccaacacctgttcagcagaaattgattccagtggttcgttcaggtcgtgat
ttagtgggtgaatcaaagacgggttcagggaaaacacataccttcctcttgccaattttt
gagaaactcaatccaaagagtggcgatgttcaagttgttattacagcgccatcacgtgaa
ttggcgacacaaatttaccaagcaacaaaacagattgctaaacactctgatactgaaatt
cgtgtggttaactatgtgggtggtacagacaagcaacgtcagattgagaaactcaaggta
gcccaacctcatattgttatcggtacaccagggcgtatctatgacctagttaagtctggt
gacttggctatccacaaggcccatacctttgttgttgacgaagctgatatgaccatggac
atgggattcttggatactgtggacaagattgcggcaagtctgcctaaagaagttcaaatt
ttggtcttctcagcaaccattcctcaaaaattgcaaccattcttgaagaagtatttgacc
aatccagtcatggaacaaatcaaaacttcaacagttattgcggataccattgataactgg
ttggtatctactaaggggcgcaataagaatgagcagattcttgagatgcttaagggaatg
cagccgtatctagcaatgattttcgttaataccaaggaacgtgctgacgatttgcacagc
tacctagtgtcaaatggtcttaaggttgccaaaattcatggaggtattccaccacgtgaa
cgtaagcgtatcatgaatcaagtcaagaagcttgattttgagtacattgtagcgactgac
cttgcagcgcgtgggattgacattgaaggggttagccatgtaatcaatgatgccatccct
caagacttgtccttctttgttcaccgtgtagggcgtacaggacgtaatggtttgtcagga
acagccatcaccctttatcaaccaagcgacgactcagatattcgtgagcttgaaaagatg
gggattacctttgaacctaaagtctataaggacggcgagtttcaagatacctatgaccgt
gaccgtcgtgccaatcgtgaaaaagcctatcaaaaacttgatacggaaatgattggtttg
gttaagaagaaaaagaaaaagatcaaacctggctacaagaagaaaattcagtggaaggtt
gatgaaaaacgcaagcgtgaacgtcgtgcggctaaccgtgctaagggacgtgctgagcgt
aaagctaagaaacaaagtttctaa
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