Entry |
|
Name |
(GenBank) excinuclease ABC subunit A
|
KO |
K03701 | excinuclease ABC subunit A |
|
Organism |
ssr Streptococcus salivarius CCHSS3
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:ssr00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SALIVB_1875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:ssr03400]
SALIVB_1875
DNA repair and recombination proteins [BR:ssr03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SALIVB_1875
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SALIVB_1875
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(1958291..1961116)
|
AA seq |
941 aa
MQDKLVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSA
YARQFLGNMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTATEINDYLRLLYARVGVPY
CPNGHGAIQSSSVEQIVDEVLALPERTRMQILAPIVRRRKGQHKAVFDRVQKDGYVRVRV
DGEIYDVTEVPELSKSKMHNIEVVVDRLVNKDGIRSRLFDSVEAALRLADGYLIVDTMDD
NELLYSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDMDLVVPDASKTL
REGALAPWNPISSNYYPAMLEQAMEQFGVDMDTPFENLKKEEQDLILYGSGDREFHFHYV
NDFGGVRDIDIPFEGVVTNINRRYHETNSDFTRNVMRGYMNELSCPTCHGYRLNEAALSV
RVGGENGLNIGQISDLSISDHLKEIDNLELGENEGVIARPIVKEIKDRLTFLNNVGLNYL
TLSRMAGTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDRLISSLKKMRDLG
NTLIVVEHDEDTMREADWLIDVGPGAGAFGGQIMASGTPEEVAKNKKSITGQYLSGAKSI
PVPTERRVGNGRFIEVTGASENNLKNVSVQFPLGKLIAVTGVSGSGKSTLVNGILKKKIA
QELNRNSEKPGKHKSVTGIEHIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVRY
KGKNIAEILDMTVDDAVDFFAAIPKIARKVQTIKDVGLGYVTLGQPATTLSGGEAQRMKL
ASELHKRSTGKSFYILDEPTTGLHTDDIARLLKVLQRFADDGNTVLVIEHNLDVIKTADH
IIDLGPEGGVGGGTIVATGTPEEVAAVPESYTGQYLKEKLI |
NT seq |
2826 nt +upstreamnt +downstreamnt
atgcaagataagttagtgattcatggagcaagagctcacaatttaaaaaatatcgatgtg
gagattccacgtgataaactggtggtggtgacgggcttgtcaggttctggtaagtcttct
ttggcctttgataccatctatgctgaggggcaacgtcgctatgtggaaagtctctcagcc
tatgctcgccagtttttgggaaatatggagaaacctgatgtggactcgattgatggtttg
agtcctgccatctccattgaccagaaaacaacaagcaaaaaccctcgttcgacggtcgga
acggcaacagagattaatgactatcttcgtctcctttatgcgcgtgtgggtgttccctat
tgtcctaatggtcatggcgctattcagtcatcctctgtagaacagattgtggacgaggtt
ctagctcttcctgagcgtacgcgtatgcagattttagcgccaattgttcgtcgtagaaaa
gggcaacacaaggccgtttttgatcgtgtgcagaaggacggttatgttcgtgttcgtgta
gatggtgagatttacgatgtcacagaagtgccagagttgtctaagtctaagatgcataat
atcgaagtggttgtggaccgcttggtgaataaggatggtatccgtagtcgtctctttgat
tcggtggaggcggccctacgtttagcagatggctacttgattgtggatactatggatgat
aatgagctgctttactcagaacattattcttgtccggtttgtggcttcacagtgccagag
ttggaacctcgtctcttttcattcaatgcgccattcggctcttgtccgacctgtgatggt
ttgggtaataaactggaagttgatatggatttggtcgttcctgatgctagtaagacctta
cgtgaaggtgctctggcgccttggaatcctatttcgtccaactattatccagctatgctt
gagcaggctatggagcagttcggcgtggatatggatacgccatttgaaaatcttaaaaaa
gaagaacaagatttgattctctacggatctggggatcgtgaattccatttccattatgtt
aatgattttggtggggtgcgtgatattgacattccttttgaaggggttgtgactaatatc
aatcgtcgctatcacgagaccaatagtgatttcactcgcaatgtcatgcgaggttatatg
aatgagctgtcatgtccaacttgtcatggctatcgtcttaatgaagcggcactctcagtt
cgtgttggtggtgagaatggcttaaatattggtcaaatctctgatttgtctatttcagat
catcttaaggaaatcgataaccttgaattaggtgaaaatgagggagtgatcgctcgtcca
attgttaaggaaatcaaggatcgcttgactttcttaaataatgtaggtcttaattatttg
actctctctcgtatggctggaaccctttcaggtggtgagagtcagcgtatccgtttggcg
acacagattggctctaacctttctggagtcctatatgtgttggatgagccttctattggg
cttcatcagcgtgataatgatcgcttgatttcaagtcttaaaaaaatgcgtgacctgggc
aacaccttgattgtggtagagcatgatgaagataccatgcgtgaggctgactggcttatc
gatgtgggacctggtgctggtgcttttggtggtcaaatcatggcctctggaaccccagag
gaagtggctaagaacaagaaatcaatcactggtcaatatctgtcaggtgccaaatcaatt
cccgtaccgacggaacgtcgtgtaggtaatggtcgttttatcgaggttacaggagctagc
gaaaataaccttaagaatgtgtctgtccagtttccacttggaaagttgattgcagtcaca
ggtgtttctggttcaggaaaatcaactttggttaacggaattctcaagaaaaaaattgcc
caagagctcaatcgcaatagtgagaagccaggtaaacacaaatcagtgacaggaatcgag
catatcgagcgtttgattgatattgaccaaagtccaattgggcgtacacctcgttctaat
ccagcgacttacacaggcgtctttgacgatattcgtgatctttttgcccaaaccaatgaa
gccaagattcgaggttacaagaaggggcgtttctctttcaatgtcaagggtggccgttgt
gaagcctgctctggtgatggtattatcaagattgagatgcactttttgcctgatgtttat
gtcccttgtgaggtttgtcatggcacacgctataattctgagaccctagaggttcgttat
aaagggaaaaatatcgcggagattctggatatgacagttgatgacgcagttgacttcttt
gcggctattcctaagattgctcgtaaggtgcagacgatcaaggatgtgggacttgggtat
gtgaccttgggacaaccagcaacaaccctctcaggtggtgaagcacaacgtatgaaactg
gctagtgagttgcacaaacgctctactgggaagtccttctacattctggatgaaccgacg
actggtctccatacagatgacattgcacgtcttttgaaggtgcttcagcgttttgcggat
gatggcaacactgttctcgtgattgagcacaatctggatgttatcaagaccgcagaccat
atcattgatttgggtcctgaaggcggtgtcggtggaggtaccatcgtagctacagggact
ccagaagaggtagcagctgttccagaaagctacacaggacaatatctgaaagaaaaattg
atataa |