Streptococcus salivarius CCHSS3: SALIVB_1909
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Entry
SALIVB_1909 CDS
T01580
Symbol
rnjA
Name
(GenBank) ribonuclease J 1 (RNAse J1)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssr
Streptococcus salivarius CCHSS3
Pathway
ssr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALIVB_1909 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssr03019
]
SALIVB_1909 (rnjA)
Messenger RNA biogenesis [BR:
ssr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SALIVB_1909 (rnjA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
SIS_2
Motif
Other DBs
NCBI-ProteinID:
CCB94162
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Position
1992116..1993798
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AA seq
560 aa
AA seq
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MASKINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDY
SYIVENVDRVKALVITHGHEDHIGGIPFLLKQANIPIYAGPLALALIKGKLEEHGLLRDA
QLYEINANTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPAD
LHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFR
LQQAAEAAVKTGRKIVVFGRSMEKAIVNGVELGYIKVPKGTIIDPSEMKNYHASEILIMC
TGSQGEPMAALARIANGMHRQVTLQPGDTVIFSSSPIPGNTTSVNRLINTIQEAGVDVIH
GKINNIHTSGHGGQQEQKLMLRLIKPKFFMPVHGEYRMQKVHAGLAVDCGVPKDNIFIME
NGDVLALTKDSARRAGHFNAQDIYVDGNGIGDIGAAVLRDRRDLSEDGVVLAVATVDFKS
KMILAGPDILSRGFIYMRESGDLIRESQRILFNAIRIALKNKDASIQSVNGAIVNALRPF
LYEKTEREPIIIPMILTPDK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaatcaatctaaaacctgaagaagttggggtttatgcgattggtggtttg
ggggaaatcggtaaaaatacctatggtattgaataccaagatgagattatcatcgtcgat
gcgggtattaaattccccgaggatgatcttctcggaatcgactatgttatcccggactat
tcttacatcgttgaaaacgttgatcgtgtaaaggcactagtcattacccatggtcacgaa
gaccatattggtgggatccccttccttcttaaacaggcaaatatcccaatttatgcagga
ccacttgctcttgctcttatcaaaggaaaattggaagaacacggactacttcgtgatgca
caactctatgaaattaatgctaatacagagcttactttcaaaaatatgagcgtgaccttc
ttccgcactactcactcaattccagaacctctcggtattgtcatccatacacctcaaggt
aaaattgtttgtaccggtgactttaagtttgacttcaccccagtaggtgagccagcagac
cttcaccgtatggctgcacttggtgaagaaggcgtcctttgcctcctctcagactcaacc
aatgctgaagtaccaactttcacaaattccgagaaggtcgttggtcaatccatcatgaaa
attattgaaggcatccacggacgtattatcttcgcctcatttgcctcaaacattttccgt
ctgcaacaagctgccgaagccgctgtaaaaactggccgtaagattgttgtcttcggacgt
tctatggaaaaagccatcgtcaatggggttgaactaggctacatcaaagttccaaaagga
actatcattgaccctagtgagatgaaaaactaccatgccagtgagattcttatcatgtgt
actggttctcaaggagagcctatggcagcccttgcacgtatcgctaatgggatgcaccgc
caagtgacactgcaacctggtgacactgttatcttctcatctagccctatcccaggaaac
acaactagcgttaaccgcttgattaatactattcaagaagctggtgtcgatgttatccac
ggtaaaatcaacaatatccatacctctggacacggtggtcaacaagagcaaaaactcatg
cttcgtttgatcaaaccaaaattcttcatgcctgttcacggtgaataccgcatgcagaaa
gttcacgcaggccttgctgttgattgtggcgttccaaaagataatatcttcattatggaa
aatggtgatgtcttagccctaacaaaagactctgctcgtcgtgcaggtcacttcaatgcc
caagatatctacgttgatggtaatggtatcggcgatatcggagcggccgttcttcgtgac
cgtcgtgatctctctgaagatggtgtcgtacttgccgtagcaactgttgacttcaagtct
aagatgattctagctggtccagacatcctcagtcgtggcttcatctatatgcgtgaatct
ggcgatcttatccgtgaaagccaacgcattctattcaatgctattcgtatcgctcttaag
aataaggatgctagcatccaatccgttaatggtgctatcgtcaatgctttacgcccattc
ttatatgaaaagacagaacgtgaaccaatcattattccaatgattctcacacctgataaa
taa
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