Streptococcus suis SC84 (serotype 2): SSUSC84_0008
Help
Entry
SSUSC84_0008 CDS
T00937
Symbol
trcF
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sss
Streptococcus suis SC84 (serotype 2)
Pathway
sss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SSUSC84_0008 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sss03400
]
SSUSC84_0008 (trcF)
Enzymes [BR:
sss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSUSC84_0008 (trcF)
DNA repair and recombination proteins [BR:
sss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SSUSC84_0008 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_16
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAZ50784
LinkDB
All DBs
Position
6241..9735
Genome browser
AA seq
1164 aa
AA seq
DB search
MNILDLLHKNKQINQWQSGLNQSTRQLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQND
AEKLVADLTAIIGSENVYNFFTDDSPIAEFVFASKERTQSRIDSLNFLTDSTSSGILVAS
IVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL
DIFDMQSETPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQ
YIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIYEQSWTLLDYLPKSSPLFL
DDFHKIADKQAQFEKEIADLLTDDLQKGKTVSSLKYFASTYAELRKYKPATFFSSFQKGL
GNVKFDALYQFTQHPMQEFFHQIPLLKDELTRYAKSNNTVVIQASSDVSLQTLQKNLQEY
DIHLPVHAADKLVEGQQQVTIGQLASGFHLMDEKLVFITEKEIFNKKMKRKTRRTNISNA
ERIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNSDRISIPVEQIDL
LSKYLASDGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDE
NQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVND
GKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILI
GTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSML
GIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSE
LKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQ
DLSIRGAGNILGAAQSGFIDSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYL
PSDYIGDQRQKIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQ
VFCHTVLRRQHQVTVTFEPMAGQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKK
EYEILEELISFAEKLKEIKARKAE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatatactcgatttacttcacaagaacaagcaaatcaatcaatggcagtcaggattg
aatcaatcaacacgtcagttattattaggactatctgggactagtaagtcacttataatg
gcgactgcctatgattgtttggccgaaaagattatgattgtgactgccactcaaaatgat
gctgagaaattagttgcagatttaacagccattattggaagtgagaatgtttacaacttt
tttacagatgatagtcctattgccgagtttgtttttgcatcaaaagaacggactcaatca
aggattgacagtttaaatttcttgacagattctaccagttcaggaattttagttgctagt
atagttgcttgtcgggtcttattgccgagtcctgagacttataaaggttctaaaatacag
cttgaagttggtcaagaaatagaagttgacaaacttgtaaagaaccttgtcaacatcggc
tacaaaaaagtgtctcgtgtattaacccagggagaatttagccaacgaggtgatattcta
gatatttttgacatgcaatcagaaacaccttaccgaatagaattttttggagatgagatt
gatggcattcgtatctttgatgttgacagtcaaaaatccttagaaaatctagacgaaatc
tcgatctctccagcttccgatatcattttgtcttcagaagactatagtagagctagccaa
tacattcagacagctattgaacaatcgactctagaggagcaacagtcttacttacgagaa
gtcttagctgatatgcagacggagtaccggcatccagatttgcgtaaattcttgtcctgt
atctatgaacaatcatggacattgttggattacttgccaaagagttctcccttatttttg
gatgattttcataaaatcgctgataagcaggctcaatttgaaaaagaaattgcagacttg
ttgacagatgatttacagaagggtaaaacagtgtcaagtttgaaatattttgcctcaact
tatgctgaattgagaaaatacaaacctgccaccttcttttcaagttttcaaaaaggttta
ggaaatgtaaagtttgatgctctttatcaattcacacagcatcctatgcaggaatttttc
caccagattccactgttaaaagatgaattgactcggtatgcgaaatcaaacaataccgtt
gttattcaagcgagttctgatgtaagtttacagactttacagaaaaatttacaagagtat
gatatccatcttccagtacatgcagcagataagttagtagaaggtcagcaacaggttacg
attggtcagttagcttcaggttttcatttgatggatgagaaactagttttcatcactgaa
aaagagattttcaataagaaaatgaagcgtaagacacgtagaaccaatatttctaacgct
gaacgtattaaggactatagtgaattagcagttggtgactatgttgttcaccatgttcat
ggtatcggtcaatacttaggaattgagactattgaaatttcaggcattcatcgtgattat
ttaacggttcaatatcaaaactccgatcgcatttctattcctgtagaacaaattgatctt
ctctccaaatacttagcgtccgatgggaaagctccaaaagttaataaactaaacgatggc
cggttccaacgaaccaagcaaaaagttcagaagcaagtggaggatattgcagatgatttg
attaagctttatgcggagcgtagtcagctgaaaggctttgccttttcacctgatgatgaa
aatcaagttgaatttgacaactactttacacacgtggaaaccgatgaccaactccgttcc
attgatgaaatcaaaaaagacatggaaaaagactctccaatggaccgtctgttagtagga
gatgtcggatttggtaagacagaggtagccatgcgcgctgctttcaaagcagtcaatgat
ggcaagcaagtagctattcttgtacctacgactgttttagcccagcaacactatgctaat
ttccaagaacggtttgcagaatttcccgtcaatgtggatgttatgagtcgttttaaaaca
aaggcagagcaggaaaaaacacttgagaagttgaaaaaaggccaagttgacatcttgatt
ggtacccatcgccttctatcaaaagatgttgtttttgctgatttaggtttactggttatt
gacgaagagcaacggtttggtgtcaagcataaggaacgcttgaaggaactgaaaaagaaa
atagatgtcctaaccttgactgcaactccgattcctcggacattgcaaatgtccatgctg
ggaatccgcgacttatcagtaattgagactccaccgacaaatcgctatcctgtacaaact
tatgtgatggaaacaaatccttccgttatccgagatgcaatgcttcgagagatagatcgc
ggaggtcaggtttactatctttacaataaagttgataccattgaacagaaagtgtctgaa
ttaaaagaattggttccagaagctactataggatacgtccatggacaaatgtcggagatc
caattagaaaatactctctatgcttttgtagagggtgaatatgatattctagtgaccaca
acaatcatcgaaacaggtgttgatattccaaatgctaatacactgtttattgaaaatgca
gatcatatgggactgtcaactctttatcaacttagaggacgtgttggccgttccagtcgg
attgcctatgcctatctcatgtaccgtccagacaagtccttgacagaagtagctgaaaaa
cgtttggaggcaatcaagggctttacagaactaggatcaggtttcaagattgccatgcaa
gatttgtccattcgtggtgcgggaaatattttaggtgctgctcagtcaggttttattgat
tctgtgggatatgagatgtattcacaattgctggaacaagctatcttggaaaaacaaggt
aaggcaacccaacgtcagaagagtaattccgaggtcaatttacagattgatgcctattta
ccaagtgattatattggtgatcagcgacaaaaaattgaaatttacaagcgtataaagaat
attgacagtcgtgtcaactatcaagaattgcaagaagaattgattgaccgttttggagag
tatcctgatgtagtagcctacttgcttgaaatcggtctactgaagtcatttttagaccaa
gttttctgtcatacagttcttagacgacaacatcaagtgacagtaacattcgaacctatg
gctggtcaaattttcctaacgcaagattactttgaagctttatctgtgacaaatttgaaa
gctcagataacggaaaataaaggaaaactagctgttgtgtttaacattcaacagaaaaaa
gaatatgaaatattagaggaattgatttcttttgccgaaaaattaaaagaaattaaagca
aggaaggcagaataa
DBGET
integrated database retrieval system
