Mammaliicoccus stepanovicii: SAMEA4384403_0675
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Entry
SAMEA4384403_0675 CDS
T06999
Name
(GenBank) DEAD-box ATP dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sste
Mammaliicoccus stepanovicii
Pathway
sste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384403_0675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sste03019
]
SAMEA4384403_0675
03009 Ribosome biogenesis [BR:
sste03009
]
SAMEA4384403_0675
Enzymes [BR:
sste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA4384403_0675
Messenger RNA biogenesis [BR:
sste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA4384403_0675
Ribosome biogenesis [BR:
sste03009
]
Prokaryotic type
rRNA helicases
SAMEA4384403_0675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
Flavi_DEAD
SUa-2TM
AAA_19
Cas3-like_C_2
UMPH-1
Motif
Other DBs
NCBI-ProteinID:
SNV60675
UniProt:
A0A239YNZ7
LinkDB
All DBs
Position
1:674973..676535
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AA seq
520 aa
AA seq
DB search
MQKFRELGISEATLNALDQMGFTEPTPIQVESIPHTLEGTDVLGQAQTGTGKTGAFGIPL
IDKVANKQGVQALILAPTRELANQVAEQLRTFSKGQNVSVVTVFGGMPIDRQIKSLKKGP
QIVVGTPGRVIDHLKRKTLKTEGIETLILDEADEMMNMGFIDDMRLIMSKLPSENRQTLL
FSATMPKAIQELVKNFMKSPKIVKTMSNELSDPQIDEYYTIVKELEKFETFTNLLDVQNP
ELAIVFGRTKRRVDELASALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGAAVTFVNPIEMDYIRQIERANK
REMTALRPPTPGEVMQAKESDVKDKVKGWVESPIEGRIEKIAEGLISEYGEQKLVAALLQ
ELIKSSDDGDVQLTFEKPLSKKSGQRGNRGGGNRGGGNRGGGNRGGNSRGGNRTRFEGKN
KRSSSDKNSSFDRNKGKNSKPQKPRSKKQFSGRTFAEHSK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttagagaattaggtatttctgaagctaccttaaacgctttggaccaaatg
ggatttactgaaccaacaccaatacaagtagaaagtattccacatacattagaaggtact
gacgtgctaggccaagcgcaaacaggaactggaaaaactggtgcattcggtattccatta
atagataaagtagcaaataaacaaggtgtacaagcattaatacttgcacctactcgtgaa
ttagctaaccaagtagctgaacaattaagaacatttagtaaaggacaaaacgtaagtgtg
gtaactgtctttggtggtatgccaatcgatagacaaattaaatcactcaaaaaaggtcct
caaattgttgttggtacacctggacgtgtaatcgaccacttaaaaagaaaaactttaaaa
acagaaggtatcgaaacattaattttagatgaagcagacgaaatgatgaacatgggcttt
attgatgatatgagattaatcatgtctaaacttcctagtgaaaatcgtcaaactttacta
ttctcagcaacgatgccaaaagctattcaagaattagttaaaaacttcatgaagagtcca
aaaatcgttaaaacaatgtcaaatgaactttctgatccacaaatcgatgagtactataca
attgttaaagaattagagaaatttgaaacatttactaatttattagatgttcaaaatcct
gaattagcaatcgtatttggtcgtacaaaacgtcgtgttgatgaattagcaagtgcattg
attagtaaaggttaccgtgcagaaggattacatggtgatattacacaagctaaacgttta
gaagtattaaagaaattcaaaaatgatcaaatagatatattagtagcaaccgatgttgct
gcacgtggacttgatatttcaggcgtaagtcatgtttataacttcgatatccctcaagat
actgaaagttatactcatagaattggacgtactggtagagccggcaaaaaaggtgctgcg
gtaacgttcgttaatccaatcgaaatggattatattcgccaaatagagagagcgaacaaa
cgtgaaatgactgctttacgtccgccaactcctggtgaagtaatgcaagccaaagaatca
gatgttaaagataaagttaaaggttgggtggaaagtccaatcgaaggccgcattgaaaag
atagctgaagggcttatcagtgaatatggagaacaaaaattagttgccgcattattacaa
gaattaatcaaatcaagtgatgatggcgatgtacaattaacatttgaaaaaccactttct
aaaaaatctggtcaaagaggtaaccgtggcggtggaaaccgtggaggcggaaatcgtggc
ggtggaaaccgcggtggtaatagccgtggcggaaacagaacaagatttgaaggtaaaaac
aaacgaagcagtagcgataaaaacagtagttttgatcgtaataaaggtaaaaacagtaaa
ccacaaaaacctcgttcaaaaaaacagttctcaggtagaacatttgctgaacattctaaa
taa
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