Sagittula stellata: ABFK29_00340
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Entry
ABFK29_00340 CDS
T10517
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sstl Sagittula stellata
Pathway
sstl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABFK29_00340 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstl03019
]
ABFK29_00340 (rnr)
03016 Transfer RNA biogenesis [BR:
sstl03016
]
ABFK29_00340 (rnr)
Enzymes [BR:
sstl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABFK29_00340 (rnr)
Messenger RNA biogenesis [BR:
sstl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABFK29_00340 (rnr)
Transfer RNA biogenesis [BR:
sstl03016
]
Prokaryotic type
tRNA degradation factors
ABFK29_00340 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
XAY81199
LinkDB
All DBs
Position
61085..63370
Genome browser
AA seq
761 aa
AA seq
DB search
MTTLPTKQEILDWISENPALTAKRDIAKAFGIKGAARIDLKRLLKELESEGQLEKRKKTY
RDPDRLPPVTVLQAKAPDANGDLFAQPLEWHGEGVEPTVLLVTRPGDPALGEGDRILARL
QVVHEADHNYEARLIRRIGASPRKVVGLFRKTAEGGRILPIDKGSDKEWMVAPDATGGAK
DGELVEAEQAGPKGRMGLPKARITLRLGDPSEPKAVSLIAIHQHGIPDDFPQEVLDEADA
MKPAGLSGREDLRDLPLVTIDPSDARDHDDAVYAVADDDPKNAGGFLIWVAIADVAYYVR
PGSELDREAKKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMKIDAEGNKLG
QTFVRGLMRSPASLTYQEVQAAIDGEPNEKTGPLLDEVLKPLYAAYAALKSARERRQPLD
LDLPERKVMLSEEGKVTSVAFTDRLDAHKLIEEMMVLANVAAAETLNAKDMPLLFRVHEE
PSQDKLESLRDTAESAGLTLAKGQVLKTRHLNQLLHQAAGKDEAELINMATLRSMTQAYY
SPKNFGHFGLALQNYAHFTSPIRRYSDLIVHRALIAAHKWGDDGLTAQEIERLEQTAQHI
SDTERRSMMAERDTNDRYLAAYLSDRLGAEFTGRLSGIAKFGIFVKLDETGADGLVPIST
LGNEYFHFDRDAGTLMGADSGRIIALGMRAKVKLVEAAPVTGGIAFELLELDDDAYESRA
GGRFGRGGARRGRSGPSPRRKLAKAKARDKKVKRKVTRQRR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccttgcccaccaagcaggaaatcctcgactggatttccgaaaacccggccctc
accgccaagcgcgacatcgcgaaggccttcggcatcaagggtgccgcacgcatcgacctc
aagcgcctgctgaaagagctggagtccgaaggccagctcgaaaagcggaagaagacctat
cgcgacccggaccgcctgccgcccgtgaccgtccttcaggccaaggcgcccgacgccaac
ggcgacctgttcgcgcagccgctggaatggcatggagaaggtgtggagccgaccgtgctg
ctggtgacccgcccgggcgatcctgcgctgggggaaggcgaccgtatcctcgcccggttg
caggtggtgcacgaggccgaccacaattacgaagcccggctgatccggcgcatcggtgcg
tcgccccgcaaggtcgtgggcctgttccgcaagaccgccgagggcggtcgcatcttgccc
atcgacaagggcagcgacaaggagtggatggtcgcgcccgacgcaacgggcggcgcgaag
gacggcgaactggtagaggcggaacaggccgggcccaaggggcgcatgggtctgccgaag
gcgcgcatcacgctgcggctcggcgatccgtcagagcccaaagcggtctctctcatcgcc
atccatcaacacggcatccccgacgacttcccgcaggaggtgctggacgaagccgacgcg
atgaagcccgccggtctgtccgggcgcgaggacctgcgcgacctgccgcttgtcacgatc
gacccctccgacgcgcgcgatcacgacgacgcggtctatgccgtggccgatgacgatccg
aaaaacgcaggcggattcctgatctgggtggccatcgccgacgtggcctattacgtgcgc
cccggctctgaactggaccgggaggcgaagaagcgcggcaactcctcctactttccggac
cgcgtggtgccgatgctgcccgaccggctgtcgggggatctatgttcgctgcacgaaggg
gttccgcgcgcctgtatcgcggtgcgcatgaaaatcgacgccgagggcaacaagctgggc
cagacgttcgtgcgcggcctgatgcgctcgcccgcgtcgctgacctaccaagaggtgcag
gcggccatagacggagagccgaacgagaaaaccggcccgcttctggatgaggttctgaaa
ccgctgtacgccgcctacgccgcgctgaaatccgcgcgggaacgacgccagccgctcgac
ctcgacctcccggaacgcaaggtgatgctgagcgaagagggcaaggtcacatcagtcgcc
ttcaccgaccggctggacgcgcacaagctgatcgaggagatgatggtccttgccaacgtc
gccgccgctgagacgctgaacgccaaggacatgccgctcctgttccgggtgcacgaggag
ccgtctcaggacaagttggagtcgctgcgcgacaccgccgaatccgccgggctgactctg
gccaaggggcaggtgctgaagacccgccacctgaaccagcttctgcaccaggccgcaggc
aaggacgaggcggagctgatcaacatggcgacgctgcgaagcatgacgcaggcgtactac
agccccaagaacttcgggcacttcggcctcgcgctacaaaactacgcgcatttcacgtcg
cccatccggcgctactccgacctgatcgtgcaccgtgccctgatcgccgcgcacaaatgg
ggcgacgacggcctgaccgcgcaggaaatcgagcggctggaacagaccgcgcagcacatc
tcggacacggagcggcgctcgatgatggccgagcgggataccaacgaccgctacctcgcc
gcctacctcagcgaccgtctgggggccgagttcaccgggcgcttgtccggcatcgcaaag
ttcgggatattcgtgaagctggacgagaccggcgccgacgggctggtgccgatctcgacc
cttggcaacgagtatttccacttcgaccgcgacgccgggaccctgatgggtgccgacagt
gggcggatcatcgcgcttgggatgcgcgccaaagtcaagctggtggaggccgcgcccgtc
accggcggcatcgccttcgaactgctggagctggacgacgacgcctacgagagccgggcg
ggcgggcggttcggacgtggcggtgcgcggcggggccgttccgggccgtcgccgcgccgc
aagctcgccaaggccaaggcccgcgacaagaaggtcaagcgcaaggtcacgcggcagcgg
cggtag
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integrated database retrieval system
