Sagittula stellata: ABFK29_03985
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Entry
ABFK29_03985 CDS
T10517
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sstl Sagittula stellata
Pathway
sstl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABFK29_03985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstl03019
]
ABFK29_03985
Enzymes [BR:
sstl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABFK29_03985
Messenger RNA biogenesis [BR:
sstl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABFK29_03985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
NAT10_TcmA_helicase
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
XAY79820
LinkDB
All DBs
Position
852995..854284
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AA seq
429 aa
AA seq
DB search
MDFDMLGLPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIV
TTIMRDQTRPGPKQVHGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINR
LAKGTDLLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKER
QTMLFSATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSVHFVEQKAKTPLLVHHLD
LHRTEAALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVA
TDVAARGIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCSAEEMGEFKAIV
KVMGREIAVASGEAWEPVKPAGRGNGRGRGGRPGGGGHGAKHGGGHKPAHAKPAAAKGRP
RRQRRAKAA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
ttggattttgacatgctggggctgccgccccgccttctgacgaacctcgccgacctgaac
atcaccgatccgaccccgatccagtcgcaggccatcccgcacgccctgaacggccgcgat
gtcatgggccttgcgcagacggggacgggcaagaccgccgccttcggcctgccgatcgtc
accaccatcatgcgcgaccagacgcgcccggggccgaagcaggtccatggcctgatcctt
gcgccgacccgcgagctcgccaagcagatcgtcgacaacctgcgcgcctacgccgcgaac
accccggtcaagatcgggctggtcacgggcggcaattccatcaacgggcagatcaaccgt
ctggccaagggcaccgaccttctggtcgccacaccgggccgcctgatcgacctgatggag
cagaaggccgtgcggctggatgcgacccgtttcctcgtgctggacgaggccgaccagatg
ctggacctcggcttcatccacgcgctgcgccagatcgccagggttctgccgaaggaacgc
cagacgatgctgttctcggccaccatgccgaagcagatggccgagatcgcctcggcttac
ctgaccgacccggtccggatcgaggtgacgcctccgggcaagccggtggagcgcatcgag
cagtcggtgcacttcgtcgagcagaaggccaagacgccgctgttggtccaccatctcgac
cttcaccgcaccgaggccgctctggtctttgcccgtaccaagcacggtgcggaaaagctg
aagcgccatcttgaggacaagggtttcgccgctggctcgattcacggcaacaagagccag
ggtcagcgggaccgcgccctgaaggccttccgtgagggagagctgacggtgctcgtggcc
acggacgtggcggcccgcgggatcgacattccgtcggtgcgctacgtctacaactacgac
ctgcccaacgtcgccgacaactacgtccaccgcatcgggcgcaccgcgcgcgcgggccgt
gacggtacggcgatcgcctattgctcggccgaggaaatgggtgagttcaaggccatcgtg
aaagtgatgggccgtgagatcgcggtggcgagcggcgaagcctgggaaccggtcaagccg
gcgggacgcggcaacggtcgtggtcgcggcggtcgtcccggtggcggcgggcacggcgcg
aagcacggcggcggtcacaagccggcgcatgccaagcccgcggcggccaagggtcgtccg
cgccgtcagcgccgcgccaaagctgcctga
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