Sagittula stellata: ABFK29_09990
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Entry
ABFK29_09990 CDS
T10517
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sstl Sagittula stellata
Pathway
sstl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABFK29_09990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstl03019
]
ABFK29_09990
Messenger RNA biogenesis [BR:
sstl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABFK29_09990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
XAY80959
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Position
2096755..2098422
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AA seq
555 aa
AA seq
DB search
MSDARLIYLPLGGAGEIGMNCYVYGYGKPGEERLIVVDMGVTFPDMDGTPGVDLILPDIT
WLKENKNRIEAMFITHAHEDHVGAVGHTFGDLSVPIYARAFTANLARQKLAEYGVEGKSV
RTCSAWPETVTVGPFTVGFLPISHSIPESSGLVIDCPAGRVLHTGDFKLDTQPLVGEPWD
PDLWAEVSKGGVKALVCDSTNVFNRHPGRSEVIVGPAVEKLVSEAKRMVVATTFASNVAR
VKTLAEAGERAGRSICLMGRAMRRMIEAAVETGVLSRFPSVVSPEDAAQLPRENLMILAT
GSQGERRAASAQLSRGKFNGIELKEGDLFLFSSKTIPGNERDVIRIMNQLSEKGVDVVDD
SMGDYHVSGHANRPDLETVQDIVQPQIVVPMHGEHRHLREHVKLAAERRRQGVLAVNGMM
IDLTGNEPKVAEYIETGRTYLDGTVQIGALDGIVRDRIRMALNGHVVVTMILDEGDEPLG
DPWCDLMGLAETGRSHVPLVDILEADLGQFVGRAGDKILTDDDKLEEGLRRVVRQTCQNE
IGKKPEVTVVVSRLS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgcgcgtttgatctatctccccctcgggggggccggcgaaatcggcatgaac
tgttacgtctacgggtacggcaagccgggtgaagagcggctgatcgtcgtcgacatgggc
gtgaccttccctgacatggacggcacacctggggtcgatctgatcctgccggacatcacc
tggctgaaggagaacaagaaccggatcgaggcgatgttcatcacccatgcacacgaagac
catgtgggcgcggtggggcatactttcggcgatctgtcggtgccgatctacgcgcgggcc
ttcaccgccaacctcgcccgccagaagctggcggaatacggtgtggagggaaagtcggtg
cgcacgtgttcggcctggccggagacagtgacggtcggaccgttcacagtggggttcctg
ccgatttcgcactccatccccgaaagcagcgggctggtgatcgactgtccggcggggcgc
gtgctgcacaccggcgacttcaagctggacacccagccgctggtcggagaaccgtgggat
cccgacctttgggccgaggtgtcgaagggtggggtgaaggctcttgtctgcgacagcacc
aacgtgttcaaccgccatcccggccgatcggaagtcatcgtcggcccggcggtcgagaag
ctggtgagcgaggccaagcgcatggtggtggcgaccacattcgcctccaacgtggcacgg
gtgaagacgctggcggaagcgggcgagcgggcggggcggtcgatctgcctgatgggccgc
gcgatgcgccgcatgatcgaggccgctgtggaaacgggcgtgctgtcgcggtttcccagc
gtggtcagcccggaggatgcggcgcagttgccgcgtgaaaacctgatgatcctcgccact
gggtcgcaaggtgagcggcgcgccgcctctgcccagctttcgcgcggcaagttcaacggg
atcgagctgaaggagggcgacctgtttttgttctcctccaagaccattccgggcaacgag
cgggacgtgatccgtatcatgaaccagttgtcggagaagggggtggacgtggtcgacgac
tcgatgggcgactaccacgtgtcgggccacgccaaccgtccggaccttgagacggtgcag
gacatcgtgcagccgcagatcgtggtgcccatgcacggcgagcatcggcacctgcgggag
cacgtcaagctggcggcggaacgccggcggcaaggcgtccttgccgtcaacggaatgatg
atcgacctgaccgggaatgagcccaaggtggccgaatacatcgagaccgggcgcacctac
ctcgacggcacagtgcagatcggcgcgctggacggaattgtccgcgaccgtatccgcatg
gcgctgaacggccacgtggttgtgacgatgatcctcgacgaaggtgacgaaccgctgggc
gatccgtggtgcgacctcatggggctggcagagaccggtcgcagccacgtgccgctggtg
gacattctggaggccgatctcgggcagtttgtgggccgtgccggtgacaagattctgaca
gacgacgacaagctggaagagggattgcgccgcgtggtgcgccagacctgtcagaacgag
atcggcaaaaagcccgaggttacggtcgtggtgagccgcctgtcctga
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