Sagittula stellata: ABFK29_21065
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Entry
ABFK29_21065 CDS
T10517
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sstl Sagittula stellata
Pathway
sstl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sstl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABFK29_21065 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstl03021
]
ABFK29_21065 (rpoB)
03400 DNA repair and recombination proteins [BR:
sstl03400
]
ABFK29_21065 (rpoB)
Enzymes [BR:
sstl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABFK29_21065 (rpoB)
Transcription machinery [BR:
sstl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABFK29_21065 (rpoB)
DNA repair and recombination proteins [BR:
sstl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABFK29_21065 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF6888
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XAY78990
LinkDB
All DBs
Position
complement(4431666..4435802)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRRYYGKIREVLEMPNLIEVQKSSYELFLKSGDQPKPMDGEGIKGVFQSV
FPIKDFNETAVLEFVDYDLEKPKYDVEECMQRDMTYAAPLKVTLRLIVFDIDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAICDAYYNTVNFEYRR
GEGWATKFFPERVRGTRPTFDLVDADTGEIIAEATKKVTPRAVKKLIDEGKVKQLLVPFE
HIVGKYVAKDIINEETGAIYVEAGDELTWTVDKDGEVSGGSLKELLDAGITEIPVLDIDN
INVGPYIRNTMEQDKNVSRETALLDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDKPDTQRTLDRDDIVACIKALVDLRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVTDGVVTDEVHYMSATEEMRHTVAQANASLDENGKFTNEMVNTRQAG
DYTLAPSETVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRAEAPLV
GTGIEEVVARDSGAAVMAKRAGIIDQVDAQRIVIRATEDLELGDAGVDIYRMRKFQRSNQ
NTCINQKPLVKVGDTVTKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISER
IAKDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEIERLARDRDDELAILDRNIYARLKGMILGKTAVKGPKGVRANSEIDEEL
LSTLTRGQWWQLALGEEDDAKHVEALHEQYEIQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPQEDMPFLSDGTPVDFCLNPLGVPSRMN
VGQILETHMGWASRALGIQVDEALQEYRRSGDLTPVRDALKIVYGDEVYQEGFADVDETA
LVEMAGNVTRGVPIATPVFDGAKEADVNDALKRAGFDTSGQSRLFDGRTGEEFSRKVTVG
MKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagtttcctcggtcagaaacgcctccgccgctattacggcaaaatccgcgaa
gttcttgaaatgccgaacctcatcgaggttcagaaatcgtcttacgaactgttcctgaag
tcaggcgaccagcccaagccgatggacggcgaaggcatcaagggcgtgttccagtcggtc
tttccgatcaaggacttcaacgagactgcggtcctcgaattcgtggactacgacctcgaa
aagccgaagtacgacgtcgaagagtgcatgcagcgcgacatgacctacgccgcgccgctg
aaggtcaccctgcgcctgatcgtgttcgatatcgacgaggacaccggcgccaagtcggtc
aaggacatcaaggaacaggacgtcttcatgggcgacatgcccctgatgaccccgaacggg
acgttcatcgtgaacggcaccgagcgcgtgatcgtgtcccagatgcaccgctccccgggt
gtgttcttcgaccacgacaagggcaagacgcacagctcgggcaagctgctgttcgcctgc
cgcatcatcccgtatcgcgggtcctggctggacttcgagttcgacgccaaggacatcgtc
tttgcgcgcatcgaccgccgccgcaagctgccggtgacgacgctgctgtacgcgcttggc
ctcgaccaggaagcgatctgcgacgcctactacaacaccgtgaacttcgagtatcgccgt
ggcgaaggctgggcgaccaagttcttcccggagcgtgtgcgcggcacccgcccgaccttt
gacctcgtggacgccgacaccggcgaaatcatcgcggaggccaccaagaaggtgacgccg
cgcgcggtgaagaagctgatcgacgaaggcaaggtcaagcaactgcttgtcccgttcgag
cacatcgtcggcaagtacgtcgcgaaggacatcatcaacgaggaaaccggcgcgatctac
gtcgaggccggcgatgagctgacctggaccgtcgacaaggacggcgaagtgtccggcggc
agcctgaaagagttgctggacgcgggcatcaccgagatcccggttctcgacatcgacaac
atcaacgtcggcccctacatccgcaacacgatggagcaggacaagaacgtgtcccgcgaa
accgcgctgctggacatctaccgcgtgatgcgcccgggcgagccgcccaccgtcgaagcc
gcgtcggccctgttcgacacgctgttcttcgacagcgagcgttacgacctgtccgccgtg
ggccgtgtgaagatgaacatgcgtctcgcactcgacaagccggacacccaacgcacgctg
gaccgcgacgacatcgtggcctgcatcaaggctctggtggacctgcgcgacggcaagggc
gacatcgacgacatcgaccacctcggcaaccgtcgtgtgcgttcggtcggcgaactgatg
gaaaaccagtaccgcgtcggcctgctccgcatggagcgggcgatcaaagagcgcatgtcg
tcggtcgagatcgacacggtgatgccgcaggacctgatcaacgcgaagccggccgccgct
gccgtgcgtgagttcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtgacgcacaagcggcgcctctcggcgcttggccccggcggtctgacccgt
gagcgtgcgggcttcgaggtgcgcgacgtccacccgacccactatggccgcatgtgcccg
atcgagacgccggaaggcccgaacatcggtctgatcaactcgctggcaacgtttgcccgc
gtgaacaagtacggcttcatcgagaccccgtatcgtgtcgtgacggatggcgtcgtcacc
gacgaggtccactacatgtccgcgaccgaggaaatgcgtcacacggtggcgcaggccaac
gcctcgctcgatgagaacggcaagttcaccaacgagatggtcaacacccgccaggcgggc
gactacacgcttgcgccttcggaaaccgtcgacctgatcgacgtgtcgccgaagcagttg
gtgtcggttgcggcctcgctgatcccgttcctcgaaaacgacgacgccaaccgcgccctg
atgggctcgaacatgcagcgtcaggcggttccgaccctgcgcgccgaggcgccgcttgtc
ggcaccggcatcgaagaggtcgtggcacgcgactccggcgccgccgtcatggcgaagcgt
gcgggcatcatcgaccaggtcgacgcgcagcggatcgtgatccgggcgaccgaagacctg
gagctgggtgacgcgggcgtcgacatctaccggatgcgcaagttccagcggtcgaaccag
aacacctgcatcaaccagaagcctctggtgaaggtcggtgacacggtgacgaagggcgag
gtcatcgcggacggtccgtccaccgacatgggggaactggcgctcggcaagaacgtcatc
gtcgccttcatgccgtggaacggctacaactacgaggactccatcctgatctctgagcgg
atcgccaaggacgacgtgttcacctctgtccacatcgaggaattcgaagtggcggcgcgc
gacaccaagcttgggcccgaagagatcacccgcgatattccgaacgtcggtgaagaagcg
ctgcgcaacctcgacgaggcgggcatcgtgtacatcggtgcggacgtggagccgggcgac
attctcgtcggtaagatcacgccgaagggcgaaagcccgatgacgccggaagaaaagctt
ctgcgcgccatcttcggcgagaaagcctcggacgtgcgcgacacctccctgcgggtgaag
ccgggcgactacggcaccgtcgtggaagtgcgggtattcaaccgtcacggcgtcgagaag
gacgaacgtgcgctgcagatcgagcgcgaggaaatcgagcgtctggcccgtgaccgggac
gacgagctcgccatcctcgaccgcaacatctacgcgcgtctgaaaggcatgatcctcggc
aagaccgcggtgaagggtccgaagggcgtgcgcgcgaactcggagatcgacgaagagctt
ctgtcgacgctgacccgcggtcagtggtggcagcttgccctcggcgaggaagacgacgcc
aagcacgtcgaagccctgcacgagcagtacgagatccagaagcgggcgctcgacgcacgg
ttcgaggacaaggtcgaaaaggtgcgccgcggcgacgatctgcccccgggcgtgatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagcttcagccgggcgacaagatggccggc
cgtcacggcaacaagggtgtcgtgtcgcgcgtggtgccgcaggaagacatgccgttcctg
tcggacggcacgccggtcgacttctgcctcaacccgctgggcgtgccgtcgcggatgaac
gtcggtcagatcctcgaaacccacatgggttgggcgtcgcgtgcgcttggcatccaggtg
gacgaggcgctgcaggagtaccgccggtcgggtgacctgaccccggtgcgcgacgcgctg
aagatcgtctacggcgacgaggtctaccaagagggctttgccgacgtcgacgagaccgcg
ctggtggagatggcgggcaacgtgacccgcggtgtcccgatcgcgaccccggtcttcgac
ggtgccaaggaagcggatgtgaacgacgcactgaagcgggccggtttcgacacgtcgggt
cagtcccgcctgttcgacggccgcaccggtgaggagttcagccgcaaggtgacggtgggt
atgaagtacctgctgaagctgcaccacctggtcgatgacaagatccacgcccgttcgacg
gggccgtactctctcgtcacgcagcagccgctgggtggtaaggcgcagttcggcggtcag
cgcttcggggagatggaggtctgggccctggaagcctacggcgccgcctacacactgcag
gagatgctgacggtgaagtcggacgacgtggcaggccggaccaaggtctacgagtcgatc
gtcaagggcgaggacaacttcgaagccggcgtgccggaatcgttcaacgttctcgtcaag
gaggtccggggtctgggcctcaacatggaactcctggatgcggaggaggacgagtaa
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