Solanum stenotomum: 125841194
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Entry
125841194 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125841194
09122 Translation
03013 Nucleocytoplasmic transport
125841194
03015 mRNA surveillance pathway
125841194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125841194
03041 Spliceosome [BR:
sstn03041
]
125841194
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125841194
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125841194
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125841194
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125841194
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
125841194
NCBI-ProteinID:
XP_049376225
LinkDB
All DBs
Position
10:complement(32555318..32563151)
Genome browser
AA seq
344 aa
AA seq
DB search
MDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPD
IKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILALARDKDLSLRNVRHFILDECDKML
ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL
VQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLMECNFPSICIHSGMS
QEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG
TKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcatttgccaagctaaatctggaatgggaaaaaccgctgtttttgtcctttca
actctgcaacagattgaaccggttgctggtcaggttgctgccctggttctatgtcacact
agggaattagcttatcagatctgtcatgagtttgagaggttcagcacttatctgcctgat
atcaaggttgctgttttctatggtggtgtcaacatcaagctccacaaagagctgctaaag
aatgaatgccctcatattgttgttggaactcctggaagaatacttgcattggcaagagat
aaggacctgtctttgaggaatgtgaggcattttatactagatgaatgtgacaagatgctt
gaatcacttgacatgaggagagacgtgcaggaaatcttcaagatgactcctcatgacaaa
caagtcatgatgttttctgcaactctcagcaaggagattcgcccggtttgcaagaaattc
atgcaagatccaatggaaatttatgttgacgatgaggccaagttgaccctgcatggactt
gtacagcactacatcaaattgagtgagacggagaaaaaccggaagctgaatgacctattg
gatgctttggacttcaaccaagttgtaatttttgtcaagagtgtcagcagagcagcagag
ttgaacaagttacttatggagtgtaattttccatctatctgcatccactctggcatgagc
caagaagaaagactgacacgctacaagggtttcaaggaagggcacaagagaattcttgtg
gcaactgatttggttggtagaggcatagacattgaaagggtgaacattgttattaactat
gacatgccagattctgcagatacttatcttcacagagtgggaagagctggtagattcgga
actaaagggcttgccataacttttgtgtcatctgcatcagattctgaagttcttaatcag
gttcaggagaggtttgaagtggatattaaagaacttcctgagcagattgatacttctaca
tacatgccatcttaa
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