Solanum stenotomum: 125841391
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Entry
125841391 CDS
T08385
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125841391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125841391
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125841391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
125841391
NCBI-ProteinID:
XP_049376464
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All DBs
Position
10:51650881..51656222
Genome browser
AA seq
1084 aa
AA seq
DB search
MDSGDVSLPRRRTRQQFLKYWVELIEKRNSLGRTGNPTQSSTCSVNIVEDVSCGRKRDRV
EENTDSADGKRKMEKSEDGSMVKVDNGRSNFSPGTCESITKPPFIHEISDDDGEEEGKEN
DVLIGEAAAGSAVNTGSCSVSWSNVGSVGLKSPTLNVADEVVSSTSSMCWTTDKSEEVVV
PIASSESESEASSDEDNDDSEDENYQVKESSSSSESDDVRSDKSKDDEESEDGDTLKDDD
LSCPTEQEHHEERNKESDGGELVPQLAVKGEKNNKGRSYLLRPRSLPKSKKKKLNHGNCS
SPILLSESSSEEDCDVDESVQNVVQKDAVRKVRKTRKKILKDSEFLKFVVDSIINVDDHD
KLTPPEEKEQKEQVPVKETLPLIFRFEDEEPLPPEKEEWEKGVDDLFVEMDMCILESRIG
FTNPSDSPIQSEKISGCQMGNHQLVLDEQIGLICKVCSHVHLESKYIFPPFAERTRGRHE
RKYFGESPSLLEVDGFKFYDSSAVHDAAIYGEGTVWDLVPLSAKTTMYPHQREGFEFMWR
NIVGDMYLEKLKEPISGNRGGCIISHPPGTGKTRLTIVFLQAFLKQFPKCRPVIIAPSNL
LLNWEAEFQKWEVDIPFHNLNSKDFSFQEDEATVSVFHCLSRAGKNNPHLIRMVKLRSWA
KSKSVLGISYDLFRILTGEDGDSYATEIREILLKLPGLLVLEEGHTARNDQSLVWKALNK
IETEKRILLSGTPFQNNIKELYNTLCVVSPKFAADLEHKWAYLSSSIDKNVRALEELRDM
IAPLVHKCSENVKKVSLPGIRDIVIHLKPTHLQKELLKRIPENPGSFYEQNMVSLISVHP
SLVATRKEFADLESQLKERGCRLDPDNGVKMKFVVELIRLCGGLKERVIIFSQLLDPLNL
IKEQLNSLFGWTLGREILYMDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEGISLI
GASRVVLLDVLWNPSVEQQAISRAYRNGQTKFVHVYCPVSSKWEVDKIEQQTKKKYHSDV
IMSRNKVNTFKMDPSCSVSEDTVLESMVKHECLRHIFEKLSHAPRVVPPTTCFNSRNQPS
KLSC
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatgtgtctcttccaaggaggaggactagacagcaattcttgaaatat
tgggttgagttaattgagaaaaggaatagtttgggtcgaactggtaatcctactcagtct
tcgacttgttcggtgaatattgtagaggatgtgagttgtgggaggaaaagagatagggtg
gaggagaacacagattctgcagatggcaagagaaaaatggaaaaatcagaagatggaagt
atggtaaaggtggacaatgggaggagtaacttcagcccaggaacttgtgagtccattacg
aaaccgcctttcatccacgaaatatctgatgatgatggggaggaggaggggaaggagaat
gatgttttaattggggaggctgctgcaggctctgctgtaaatactggatcatgttcagta
tcttggtccaatgtgggctctgttgggttaaagagtcctacattgaatgtagcagatgag
gttgtttcatccacctcaagcatgtgttggaccacagataaatcagaagaggttgttgtt
ccaattgcatcttctgagtcagaatctgaagcttcaagtgatgaggataatgatgactcc
gaagatgagaattaccaggtgaaagaatcatcaagttctagtgaatctgatgatgtaaga
agtgataaatcgaaagatgatgaggaatcagaagatggtgatacattgaaagatgatgat
ctgagttgtccaacagagcaagaacaccatgaagaacgaaacaaggagtcagatggtggg
gagctagtacctcagcttgctgttaagggtgaaaagaacaacaaaggccgatcatatctt
cttcggccgcgctcacttcctaagtccaaaaagaagaagttaaaccatggaaattgtagc
agcccgattcttcttagtgaatcctcatctgaggaggactgtgatgttgatgagtcggtg
caaaatgttgttcaaaaggatgctgttcgaaaggttagaaagactcggaagaagattctt
aaagattctgaatttctgaagtttgtcgttgattctataataaatgttgatgatcatgat
aaactaactcctcctgaagagaaagaacaaaaggaacaggttcctgtcaaagaaacactt
cctttaatattccggtttgaagacgaggaacctctcccgccagagaaagaagaatgggaa
aagggagttgatgatctttttgttgaaatggacatgtgtatcttagaatcacgtattggc
tttacaaatccatctgattcacctatacaaagtgaaaaaataagtggctgtcagatgggg
aaccaccagcttgttctagatgaacaaattggactcatctgtaaagtttgttcccatgtg
catttggagagcaagtacatcttccctccatttgctgagagaacccgagggagacatgaa
agaaaatattttggagagtcgccatccctcttggaagttgacggcttcaaattttatgat
tcttctgccgttcatgatgctgctatttatggggaaggaactgtgtgggatttagttccc
cttagtgccaaaacaacaatgtatcctcatcagcgtgaaggatttgagttcatgtggaga
aatattgttggagatatgtatcttgagaagctgaaagagcctatatctggtaatagggga
ggatgcataatctcacatccacctggcacaggaaaaacccgtctcactatagtatttctt
caggcatttttgaagcagtttccaaagtgtcggcctgtaatcatagctccatccaatttg
cttcttaactgggaagccgagttccaaaagtgggaggttgacattcccttccacaacttg
aacagcaaagatttctctttccaggaagatgaagccactgttagtgtcttccactgttta
tcccgtgccggaaaaaacaatccacaccttatacgtatggtgaagctgagatcctgggct
aaaagtaagagtgttttgggaatcagctatgacttgtttaggattctcacgggagaagat
ggagacagttatgccacagagattagagaaatacttctaaagttacctggtcttctggtc
cttgaagaagggcacactgctcggaacgatcaaagccttgtgtggaaagctttgaataaa
attgaaacagagaagcgcattcttttgtctggaactccgttccagaataacatcaaagag
ttgtacaacaccctatgcgtagttagtccaaaatttgctgcagatttggagcataaatgg
gcttatcttagcagttccattgacaagaatgtccgagcattggaagagcttagggatatg
attgcaccactagtccataaatgtagtgaaaatgtgaagaaggtaagccttccgggtata
agggatattgtgatacatttgaagcccacacatttgcagaaggagttgcttaaaagaatt
ccagagaatccaggctccttttacgaacaaaatatggtgtctctaatctctgttcatcct
tcattagtggcaacgaggaaggagttcgctgacttagaaagtcagctaaaagaaagagga
tgtcggttggatccagataatggagtaaaaatgaaatttgttgttgaactaatcagactc
tgtggtggattgaaggagagggttataatatttagccagttacttgatcctctaaacttg
atcaaggagcaactcaattctctttttggctggactttaggccgagagatcctctatatg
gatggaaaacttgatgtaaagcagcggcagatatcaataaattctcttaatgaccctaag
agtgatgtaaaagttcttcttgcatcaataaaagcctgttcagaaggaataagtcttata
ggggcctcaagagtggttttgcttgacgttctctggaatccctcagtagaacagcaagcc
atcagtcgagcctacagaaatggtcagactaaatttgttcatgtttactgtccagtgtca
tcaaaatgggaggtggacaagatcgaacagcagacaaaaaaaaaatatcattcagatgtt
attatgtctaggaataaagtgaatactttcaagatggatccttcatgttctgtgtcagag
gataccgtactagaatccatggttaagcatgagtgcctccgtcatatttttgaaaaacta
tctcatgcaccacgtgtggtgcctcctactacatgctttaattctcgtaaccaaccttca
aaactgagctgttag
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