Solanum stenotomum: 125841599
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Entry
125841599 CDS
T08385
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
sstn
Solanum stenotomum
Pathway
sstn03030
DNA replication
sstn03420
Nucleotide excision repair
sstn03430
Mismatch repair
sstn03440
Homologous recombination
sstn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125841599
03420 Nucleotide excision repair
125841599
03430 Mismatch repair
125841599
03440 Homologous recombination
125841599
03460 Fanconi anemia pathway
125841599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sstn03000
]
125841599
03032 DNA replication proteins [BR:
sstn03032
]
125841599
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125841599
Transcription factors [BR:
sstn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125841599
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125841599
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125841599
MMR (mismatch excision repair)
125841599
DSBR (double strand breaks repair)
HR (homologous recombination)
125841599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
DUF936
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
125841599
NCBI-ProteinID:
XP_049376709
LinkDB
All DBs
Position
10:48915094..48919244
Genome browser
AA seq
900 aa
AA seq
DB search
MPPINLTEGAIEMLSIGEGHPEEFKPVLQITDVRLVNTQNQTNNNERYRILISDGTHIQQ
GMLATQKNDLIRSQQIRKGTIIQMKEFVRNVIQNRVIIIIIELDILLETCDQIGDPKHYV
RTDGSVPSVPRPAAPLQPSTNQLGGVSVNPQSFASLSATSGSTPRPNMSGGMQSPEMNRS
SVYNTTSVGNTDSGRYSSGAPLYPRAESGPAISRAPMNYVRPPQPSYQQPPQSSYQQPSP
MYSNRGPVAKNEAPPRIIPIAALNPYQGRWTIKARVTAKTELRHYNNQRGDGKVFSFDLL
DSDGGEIRVTCFNSVADQFYDQIEPGRVYQISKGSLKPAQKNYNHLPNDHEIMLESTSVV
QPCFEDDRAIPQQQFHFRPISDIEAMENSNVIDVIGVVSSISPSSSIMRKNGTETQKRVL
QLKDMSGRSVEVTLWANFCNAEGQTLQSLCDSGAFPVLAVKAGRVNDFNGKSIGTISTSK
LFIEPDFPEALKTKAWFEREGKNIPSMSLSREVSSIGRTDVRKTISQIKDEKLGTSEKPD
WITISASVTFIKVDNFCYTACPLMIGDRQCNKKVTNNGDGKWRCDRCDQTVDECEYRYIL
QFQIQDHTGLTWVTAFQECGDQIMGVSAKELYFLKYEEQDDDRFAEIMRTVLFNQFIFKL
KVKEEMYSDEQRVKSTMVKAEKLNFQPETRFLFDLINKINGQESSTLPPKTDDATPNSGF
NNTGVGNKRKEPMSPVASYGGSHSGISRDSGLQGNRQGPYGNQLTGSQFAPPGSTAGSIS
RESGLQGNRQGPYGNQLTGTQNAPTGSSTGMYMSCNSCGGTGHSASNCPSMMSGQSQAYG
GGFGNRATSGMSSGGGGECYKCHQYGHWARDCPGVSNAPAANNMTSGRYGNTPRQHVGGF
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgattaacttgacggaaggagcaatagagatgctatcgatcggagaagggcat
cccgaggagtttaaaccggtgctacagatcacggatgttcggttggtgaatactcagaac
cagactaacaataatgaacgataccggattttgatatcggacggaacgcatattcagcaa
gggatgttagctacgcagaagaacgatctaattcggtctcaacagattcggaaaggaact
attattcagatgaaagagttcgttcgtaatgtcatccagaatcgagtgatcatcattatt
attgaattagatattttacttgagacatgtgatcaaattggagacccaaagcattatgtc
agaactgatggtagtgtcccttcggtgccacgaccagctgccccgctgcagccttccacc
aatcaattaggtggtgtaagtgtaaacccccaatcatttgcttctctttccgctacttca
ggctcaactccaagaccaaatatgtcaggaggaatgcaatctccagagatgaaccgtagc
agtgtttacaatactacctctgttgggaatactgactctggacgatatagttcaggtgca
cctctttaccccagagcagaatctggtcctgcaatttcacgggctccaatgaattatgtg
cgtccacctcagccttcttatcaacagcctcctcagtcttcttatcagcaaccatcacca
atgtactccaacagaggacctgtagccaagaatgaagcacctccaaggattattccaatt
gctgctctcaatccatatcagggtcggtggactatcaaggccagggtaaccgcaaagacg
gaactcagacactacaacaatcaaaggggtgatggaaaagtattctcttttgatcttctt
gattctgatggaggagaaataagggtgacttgttttaactctgtagctgaccaattttat
gaccagattgagccaggtagagtgtatcaaatttcaaaaggaagcttgaaaccagctcag
aaaaattacaatcaccttccaaatgaccatgaaattatgctcgagagcacgtctgtagtt
caaccttgttttgaggatgacagggctattcctcagcagcaatttcattttcggccaatc
agtgacattgaagccatggagaacagcaatgtgatagatgtgattggtgtggtgtcttca
ataagtccatctagttcaataatgaggaaaaatggtacagaaactcagaagagagtcctc
cagctgaaggacatgtctggtagaagtgttgaagtaactttgtgggcaaatttctgcaat
gcagaaggtcaaacacttcagagtctctgtgattctggggctttccctgtcttggcagtt
aaagctggtagagtaaatgattttaatggcaaatctataggtactatatctacaagcaag
ttgtttatagaaccagattttcctgaagctctgaaaacgaaggcatggtttgaaagggag
ggaaagaacataccatctatgtcattgtcacgagaagtgagcagtattggtcggacagat
gtgcggaagactatatctcaaatcaaagatgagaagttaggcacttctgagaaaccagat
tggatcactataagtgccagtgttacatttataaaggttgacaatttttgctatactgca
tgtcccctcatgataggagatagacagtgcaacaaaaaagtgacaaataatggggatggg
aaatggcggtgtgacaggtgtgatcagactgttgatgaatgtgaatataggtacattctt
cagttccagattcaggaccatactggcttaacatgggttactgcatttcaagaatgtggt
gaccagataatgggtgtatctgcaaaagaattgtatttcttaaaatatgaggagcaggat
gatgataggtttgcagaaatcatgcgtactgtgttattcaaccagtttatatttaaattg
aaagtgaaagaagagatgtatagtgatgagcagcgtgttaagtcaacaatggtcaaagct
gagaagctgaacttccaaccagagaccaggtttctgttcgacctgataaacaagattaat
gggcaggaatccagcactttacctcctaagacagatgatgcaactccgaattcagggttt
aataatactggagttgggaataaacgcaaagaaccaatgagccctgttgcaagttatggt
ggcagccatagcggtatcagcagagatagtggactgcagggaaatcggcaaggtccatat
gggaatcagcttactggctcacagttcgctccgcctggctctactgcaggcagtatcagc
agagaaagtggactgcagggaaatcggcaaggtccatatggaaatcagcttactggaaca
caaaatgctccgactggctcttctacaggcatgtatatgagctgtaatagttgtggtgga
acaggtcatagtgcttcaaactgtccaagcatgatgagtggtcagagccaggcatatgga
ggtggttttggcaatagggcaacttcagggatgagcagtggtggtggtggtgagtgttat
aaatgccatcagtatggacattgggcaagagattgcccaggtgtaagcaatgcacctgct
gccaataacatgacatcaggaagatacgggaatactccaaggcaacacgtcggtggtttt
tga
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