Solanum stenotomum: 125842243
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Entry
125842243 CDS
T08385
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125842243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125842243
04121 Ubiquitin system [BR:
sstn04121
]
125842243
03036 Chromosome and associated proteins [BR:
sstn03036
]
125842243
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125842243
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125842243
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125842243
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125842243
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125842243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-HC5HC2H_2
zf-RING_UBOX
zf-RING_2
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_5
PHD_NSD
PTCB-BRCT
zf-RING_10
zf-rbx1
zf-UDP
Motif
Other DBs
NCBI-GeneID:
125842243
NCBI-ProteinID:
XP_049377456
LinkDB
All DBs
Position
10:23740686..23746986
Genome browser
AA seq
998 aa
AA seq
DB search
MADISHLERMGRELKCPICLSLLNSAVSLTCNHVFCNLCIQTGMKSGSNCPVCKVPFHRR
EIRPALHMDNLVSIYKNMEITSGVNMFLTQSNPSSKLPGEDTQSNGEKNCGFQETPKTVT
EAPATGNQKRKRGKDSKKSSGCNKKISGSNLIRPSFPTKKRVQVPQYPPSETPPPTKLVG
GNGKSITDEVHKPLVIERDRSMLNEKGEPVLSPFFWLREENIERSSQQTDGDIIMDTPPA
VPSFSDMKDLDDEVHCEMSPKSGPYDAASGAELFDSEMFDWTQRACSPELCSSPFKMKLK
DTIDSAGAQEKTQARSVEESGINASATENRTAVENEMGTDKGQLSSPALFPPENKTTSRK
DVVCKSSRSKALRISQKKQGKSIIGEVSEVHNASPKAAEKIMKNNQDNANAFISNKKDLK
NKKKGRSSRNVTGSVVEDISTLCGAKRLSKGNNSKSFNLSTLVNQEKHSEGSVETLDLKT
HNKLRKGSLSEQNKNCFGPEGGQKTAACNIPQTQDEALPFESANRLVPMDNRKPTPSTKL
KKCELGSGNKLHGKKKVKFSDDGQLADKDNITLQKIQKRVHNSLETEKSVLNLNDSVLQK
CEASQNQIQCAFCRSAEESEVSGVMVSYLNGNPVKEDVNGAPGVIHVHKYCAEWAPNVYF
GDDDVVNLESELKRSRRITCFFCGVKGAALGCYETSCRKSFHVPCAKLTPECRWDSDNFV
MLCPLHANSKLPCEIPGKQTKIGDSIKRNSRIHQPKVSATPDNAATLQWKSQKKNKNLVI
CCSALTADEKELVSTLKRLSGVTVVKNWDLSVTHVIASTDEKGACRRTLKYLMGVLAGKW
IMSIDWIIASLEATEFIDEQQYEIKIDTHGIVDGPKLGRLRILNKQPKLFNGYKFFFMGD
FLPSYKSYLHDLVIAAGGIVLNRKPIAVDQEILSPGCSPPFVIYSHEQLDQCEGSEKISI
IVRRRSDAEVLASSTGAVAASNSWILNCIAGSRLLELE
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatttcgcatcttgaaagaatgggaagagagctcaaatgccccatctgcttg
agtctgttgaattctgctgtttcacttacatgtaatcatgtattttgcaatttatgtatt
cagactggtatgaaatctgggtccaattgtccggtgtgcaaagttccatttcatcgcaga
gaaatccgacctgctctccacatggataacttggtgagcatctataagaacatggaaatc
acttcaggagtcaatatgtttctcactcaatccaatccttcatcaaaattgccaggggaa
gacactcaatctaatggtgaaaaaaattgtggattccaagagacacctaaaactgtaaca
gaagctccagcgacaggcaatcagaaaagaaaaagagggaaagactcaaaaaaatcttca
gggtgcaacaaaaaaatttccggatcaaatcttattagaccttcttttccgacaaagaag
agagtgcaggtgccacaatatccaccttcagagactccaccacctacaaagttagttggt
ggaaatggtaaatccatcaccgatgaagttcataaaccattggtaattgagagagacagg
tctatgctaaatgaaaaaggagaacctgtactatctccattcttctggctgagagaagag
aatatagaaagatcaagtcagcaaacagatggggacattatcatggatacacctccagcc
gttccatccttcagcgatatgaaggacttggatgatgaggttcactgcgaaatgtctcca
aaaagtggaccctatgatgcagcaagtggagcagaactttttgacagtgagatgtttgac
tggacacaaagagcttgctcccctgaactttgttctagcccctttaagatgaagcttaag
gatactattgattctgctggagctcaggaaaagactcaagctcgctcagttgaggaaagt
ggcattaatgcatcagcaactgaaaacagaacagctgtggaaaatgaaatgggtactgat
aaaggacagctgagttcacccgctttatttcctcctgaaaataaaaccactagcagaaaa
gacgttgtttgcaagtctagcaggagtaaggcattgagaattagccagaagaaacaagga
aaaagcataattggagaagtatcagaagttcataatgcttcaccaaaagcagctgaaaaa
attatgaagaacaatcaggataatgccaatgcatttatctcgaataagaaggatttgaaa
aacaagaaaaagggtagatcctctagaaatgtcactgggtcagtagtagaagacatttcc
actttatgtggtgctaaaagacttagcaagggcaataactcgaagtccttcaacttgtct
actcttgtgaatcaggaaaaacacagtgaaggaagtgttgagacacttgacttgaagaca
cataataaactccgcaagggatcattaagtgaacaaaataaaaactgttttggaccagaa
ggcggacaaaaaactgctgcatgtaacattccacaaactcaagatgaagctttgcctttc
gaatcagcaaatagattggttcccatggataacaggaaacctactcctagtacaaaactg
aagaaatgtgagctcggtagtggcaacaagcttcatgggaagaaaaaagtgaagttttct
gacgatgggcagcttgctgacaaggataatattacgcttcaaaagattcagaagagagtg
cacaattcattggaaacagagaaatctgttttgaacttgaatgattcagttttgcagaag
tgtgaggcaagccaaaaccaaatacagtgtgctttctgccgttcagcagaggaatctgag
gtttcaggagtcatggtaagctaccttaatggaaaccctgtcaaagaagatgtcaatgga
gcaccaggtgttatacatgttcacaaatattgtgcagaatgggcccctaatgtatatttt
ggagacgatgatgtggtcaaccttgaatctgaactgaagaggagtcgaaggatcacttgt
tttttctgtggagtaaagggggcagctcttgggtgttatgagacgagttgtcgcaaaagc
tttcatgttccttgtgccaaattgacaccagagtgtagatgggattctgacaactttgtt
atgttatgccctttgcatgctaactctaagttgccatgcgagatcccaggaaaacagaca
aagattggagatagtattaaaagaaattctcgtatccaccaacccaaagtctcagcaaca
cctgacaatgctgctactttgcagtggaagtctcagaagaagaataagaacttagtgatc
tgttgttcagctctaaccgctgatgaaaaagagcttgtttctacattaaagaggttgtct
ggagtgacagtagtcaagaactgggacctaagtgtcacccatgtcattgcttctacagat
gagaaaggagcatgccgaagaactctcaaatatttgatgggtgtcttggctgggaaatgg
ataatgagcatcgactggattattgctagcttggaagccacagaatttattgatgagcaa
caatatgagattaaaatagatactcatggcattgtggatgggcctaagcttggaagattg
aggattttaaacaagcaaccaaagcttttcaatggatacaagttcttttttatgggtgac
tttttaccttcatacaagagttacctacatgaccttgttattgctgctggaggaattgtc
cttaacaggaagcctatagcagtggatcaggaaattctttcacccggatgctctccaccg
tttgtaatttatagtcacgaacaacttgatcagtgtgaaggaagtgaaaaaatttcaatt
atagtgcgcagaagatctgatgcagaagttttggctagttcaactggagcggtagctgcc
agcaactcatggattctaaactgcattgctggctctaggttgttggagctagaatag
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