Solanum stenotomum: 125842491
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Entry
125842491 CDS
T08385
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125842491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125842491
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125842491
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125842491
NCBI-ProteinID:
XP_049377749
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All DBs
Position
10:40203527..40208606
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AA seq
238 aa
AA seq
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MDIDRKDGRTANQLRPLSCTRNVLNRAHGSASWSQGETKVLAAVYGPKAGTNKNENPEKA
CFEVIWKPKTGQIGKAEKEYEMILKKTVQSICVLNVHPNTTTSIIIQVVNDDGALLPCAI
NALCAALVDAGIPLKHLAVAICCCLTESGHILLDPSKLEEQRMKAFVYLVFPNSTLSVLP
EEALKVRGEPMEHGLITSSTHGVMSVDDYIRCLERGRAATSKLSDFFRRNLQSQVQSD
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atggacattgatagaaaagatgggcgaacagcgaatcaattgagaccattgagttgcact
cgtaatgttcttaatcgcgctcatggctctgcaagttggtctcaaggggagacaaaagtt
cttgctgctgtttatggaccaaaggctggaacaaacaagaacgagaatccagaaaaggca
tgttttgaagtcatttggaagccaaaaaccgggcagattggtaaagcggagaaggagtat
gagatgattttgaagaagactgtgcaaagcatttgtgttttgaatgttcatccaaatacc
accacgtcaattatcattcaggttgtcaacgatgatggagctcttcttccatgtgccata
aatgcattatgtgctgcccttgtggatgctggaattcctttgaagcacttagctgttgca
atatgttgttgtctaacagagagtggacatattctactggaccctagcaagctagaagaa
cagagaatgaaggcgtttgtatatctagttttcccgaactcgacattatctgtgcttcct
gaagaagcattgaaagtgagaggtgaacccatggaacacgggcttataacatcttctacg
cacggtgtcatgtcggttgatgactacatacgctgtttggagagaggacgtgctgccact
tccaagttgtctgattttttcaggagaaacttgcaatcacaagtccaaagtgactaa
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