Solanum stenotomum: 125842528
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Entry
125842528 CDS
T08385
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125842528
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125842528
microRNA pathway
RISC loading complex
125842528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
dsrm
SWI2_SNF2
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
125842528
NCBI-ProteinID:
XP_049377786
LinkDB
All DBs
Position
10:41122298..41506567
Genome browser
AA seq
1659 aa
AA seq
DB search
MEEENQENPLKRNFEAFSSEAEQMDVEKKKKIEEFIPREYQLKVFKVAMRRNTIAVLDTG
AGKTNIAVMMIREIGKALRNDDDKKLIVFLAPTVHLVHQQYEVIQHHTHLAVQEYYGAKG
VDEWNAESWKKETDDNDVLVMTPQIFLDALRKGYIKFDTVCFLILDECHRASGNHPYSRI
MKEFYHLSRKRSKIFGMTASPVIRKGVSSSTDCEEQISELESLLDSQVYTLENRVELDEF
VPSAKETCKFYDPIVFSNTELKAKLEFSWSKFDAALAELKLSLPSQYKDIDDMYKKLRKR
LSNCYAKILCCLENLGIICAYEAVKICLENVPNDKDENEILRTSSLQHRYFLEEALSIVQ
ESMPQDCESLFDVGYDSSATLSMGHISSKLQVLLEIFQFLRKATQVRCLIFVERIITAKV
IERVMKKMTRFSHFTIAYLTGTNTSVDALTPKVQKETLGSFLSGKVNLLFATDVVEEGID
VPHCSSVIRFDLPKTVRSYVQSRGRARQTESQYILMLERGNKKQREQMFDIIRSEYSMTD
TAIKRDPDDSVVKPCLVKETKAYYVEATGASVTADSSVSVLTKYCEMLPGDKFFSPKPLF
QYILSGELYRCKLTLPPNAAFQTIVGPECRSSQLSRQLVCLDACKKLHQIGALNDHLLPF
NEKPPRGDSDVQDRKLGAGTTKLKELHGTACISALSGSWGNDPNGEVYQVYKMNFPCNIK
EVKYSSFILLLQSELDYDVGNVEVELFLVSKFVESSVSHCGKVHLDSQQVAKAKIFQELF
FNGLFGKLFIKSSGGRKFLLDSEKSLWEPSNMYLLLPLDPLDSSCEPYRVDWEAIESSVS
VVEFLKKNAWLSNEKSEAKRKNSLVDRTASFVEDLDQTDLIHFANISISRSNIMDMVVVA
IHTGRIYSVLDAVANTSAESPFEVDSEATVAPFSSFADYFHKKYGIVLVYPGQPLLLLKQ
SHNAYNLLVDFKKEGISCGPKSKDSTMVVQKPLNNVHMPPELLVCFDIRLDILKSFYLLP
SLMHRLESLMLASQLRKEISSHSGDLHISSSLILEALTTLRCNESFSMERLELLGDSVLK
YAVSCHLFLKYPKKHEGQLTNERSQAISNSALHKLGTNQHLQGYIRDGAFDPRRWTAPGQ
LSLRLCPCEHGVETSQVPLDKKFLTEDPKEVVGKHCDRGHRWMGSKTISDCVEALIGAYY
VGGGFVAALKLMKWLGVKAELEPSLVEDAINTASLYSYTPKAKDIEDLELKLSYRFSIKG
LLLEAITHATVQELDAGYSYQRLEFLGDSVLDILVTWYLYQKHKDIDPGELTDLRSASVN
NDNFAYAAVRRNLHVHLQHHSGYLESEISLFVKSVSNSCSLQGNKAPKVLGDLVESIAGA
VLIDTKLDLDEVWKIFKPLLSPIVTPDKLELPPLRELIELCDSLGYFWKEHCVVKGDTVN
AELRLQLKDDLLVAEGSGQTRKNAKAQAALKLLKNLEKKGISSKKKKEEASFVDVPQSLD
FDGDICIQANTSCPDMASRKKRKKVYLNLKPDEAQPVPSDCSTSASYSNKDIQVIGPINM
KRGGPRISLFELCKKLQWPMPSFESIERTSKSLIECGEGSDKRKVYNTFASQISLTIPDY
GLIKLTGDERADKKSSLDSAALHMLYELERQGKIAIGNQ
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagaaccaagaaaaccctttgaagagaaactttgaagcttttagtagtgaa
gctgaacagatggatgtagagaagaagaagaagatagaggagtttatacccagagagtat
cagttgaaggtgtttaaagtggctatgagaaggaacaccattgctgtactggatacaggg
gctgggaagactaatatagcagtgatgatgattagagaaattgggaaagcgttgaggaat
gatgatgataagaagttgattgtgttcttggcaccaactgttcatcttgttcatcagcaa
tatgaggttatacaacatcatacacaccttgctgttcaagaatactatggggccaaagga
gttgatgaatggaatgcagagtcctggaaaaaagaaactgatgataatgatgttttggtt
atgacaccccaaattttcttggatgcactgagaaagggttacataaaatttgatacagtg
tgctttctgatactagacgagtgccatcgcgccagtggtaaccatccctattctaggatt
atgaaggaattctatcatctatccagaaaaagatcgaagatttttgggatgactgcttcc
cctgttattagaaaaggtgtttcatcttcaacagattgcgaggagcaaatatcagaactt
gaaagtcttcttgattcccaggtatatacacttgagaacagggtggagctggatgaattt
gttccctctgctaaggagacttgcaaattctatgatccaatagtgttttcaaatacagaa
ttaaaggcaaagttggagttttcatggtcaaagtttgatgctgcattagctgaattgaaa
ctgtcactgccaagtcagtacaaagatatagatgatatgtataagaagcttcggaagaga
ttgtccaattgttatgcaaagatattgtgttgccttgaaaatctaggcatcatttgtgct
tatgaggctgttaaaatctgcttggaaaatgtgcctaatgacaaagatgaaaatgagatt
ctaaggacaagttctctacaacatagatactttttggaggaggcattgtcaattgtccag
gaatcaatgccacaagactgtgagagtctcttcgatgttggatatgactcatcagcaact
ctgtcaatgggccatatatcttcaaaactgcaagtacttcttgaaatttttcaattcctt
aggaaagccacacaagtacgctgtctcatttttgttgaaagaattataacagctaaggta
attgaaagagttatgaagaaaatgacccggttttcacatttcacaatagcatatttgact
ggaacaaacacatctgtcgatgctctgacaccaaaagtgcaaaaagaaaccttgggatct
tttctctctggaaaggtcaatttattatttgccactgatgtagttgaggagggaattgat
gtgccacactgttcctcagtaatacgatttgatttaccaaagacagttcgtagttatgtc
caatctaggggacgtgctcgtcagactgagtctcagtatatactaatgcttgagagagga
aacaagaagcagagggagcagatgttcgatataattaggagtgaatattctatgacagat
acagctataaagagagaccctgatgattctgtggtgaaaccttgtctagtgaaggaaact
aaagcatattatgtggaggcaactggagcatctgtaactgcagattctagtgtcagtgtc
ttgactaaatattgtgaaatgctccctggagataagttcttctctccaaagccattgttt
cagtacattttgtctggagagttgtaccggtgtaagttgacattacctccaaatgcagct
ttccaaacgattgttggtccagaatgcaggagttctcaactatcaagacagcttgtctgc
ttggatgcatgtaagaagctgcaccagattggtgctctcaatgatcatcttcttcctttc
aatgaaaagcctccccgaggtgattctgatgtgcaggacagaaaattaggggcaggaaca
acaaagttgaaagaattacatgggacagcttgtattagtgcattatctgggtcatgggga
aatgatcctaatggagaagtatatcaagtgtataaaatgaacttcccttgcaacatcaag
gaagtgaaatattccagttttatccttttgcttcaatcagaacttgattacgatgtggga
aatgtggaagtggagcttttcttagtttccaagtttgtcgaatcctccgtgtcgcattgt
gggaaagtacatttggattcccaacaggtggcaaaagcaaaaatattccaagaactattc
tttaatgggctgtttggtaaattatttattaaatcatcgggtggaaggaaatttctgctt
gattcagaaaaatctttgtgggagccatcgaacatgtacttgcttctaccgctggatcct
ttagattcaagttgtgaaccctacagagttgattgggaagcaattgaatcttctgtttca
gttgtggaatttttgaaaaaaaatgcgtggttaagcaatgagaaatctgaagctaaacgg
aagaactccttagttgataggactgcatcatttgtggaagatcttgatcaaacagatttg
attcactttgccaatatatcaatctcaagaagcaatattatggacatggttgttgtggcc
attcatactggaagaatttattctgttctggacgctgttgccaatacttccgcagagagc
cccttcgaagtagattcagaagctactgtcgcacccttctcatcttttgctgactacttc
cataaaaagtacgggattgttttagtgtatcctggacagcctttgttgctactgaagcaa
agccataatgcatacaatcttctcgtggattttaaaaaggaaggcatttcatgtggaccg
aaatcaaaagatagtacaatggtggttcaaaagccactgaataatgttcacatgccacca
gaacttctggtctgttttgacattcggttagacatcttgaaatccttctacttgctacca
tcattaatgcaccgcctggagtccctgatgttggctagccagttgaggaaagagatatca
agccattcaggcgacttacatatatcaagctcattgattctggaagctcttacaactctc
agatgcaatgagagtttctccatggaacgtctggagttgcttggagattcagttctgaag
tatgctgttagttgtcacctcttccttaaatatcccaagaagcatgaagggcagctaact
aatgaacgttcacaggctattagtaactcagccctccataaattgggaactaatcaacat
ttgcagggttatatacgggatggtgcatttgatccacgccgatggactgctcctgggcag
ctttccctgcggctttgtccttgtgagcacggggttgaaacttcacaagtgcctttggac
aagaagtttctgactgaagatcccaaagaagtagttgggaaacactgtgatagaggacac
agatggatgggttcaaaaacaatatctgactgtgttgaagcgctaataggtgcatattat
gttggtggtgggtttgttgctgccctcaaattgatgaaatggcttggtgttaaagctgag
ctagaaccttcattagtagaggatgcgatcaatactgcatctctttattcttatacccct
aaagctaaagatattgaagaccttgagttgaagcttagctatagattttctattaaggga
ctgcttctagaagctataacacatgctactgtgcaagagctggacgctgggtacagttat
cagaggcttgaatttcttggcgactcagtactggacattctcgttacctggtacctttac
cagaagcataaagatattgatcctggggaactaacagatctgcgttctgcttctgtcaat
aatgataatttcgcttatgctgctgtgagaaggaatcttcatgtccaccttcaacatcat
tctggatatcttgaaagtgaaatatcattgtttgtgaagtcagtctctaattcttgttca
ctccaaggaaacaaagccccaaaggtacttggagacttggtggagagtattgctggagca
gtacttattgataccaaacttgacctggatgaagtttggaagattttcaagccactattg
tctcccatcgtgactcctgataagcttgaactacctccgttgcgtgagctcatagaatta
tgtgactcacttggctacttctggaaagaacattgcgtggtgaagggggataccgtgaat
gctgagcttaggttacagctgaaagatgatctgctggtcgctgagggatctggacaaact
agaaaaaatgcaaaggcgcaagcagctctgaagttactgaagaacttagagaaaaaagga
atttcatccaagaagaaaaaagaagaggccagctttgttgatgtgccacaatctttagac
tttgatggtgacatctgcatccaagcaaatacttcttgtcctgatatggcttcacgcaaa
aagcgaaagaaagtatatttgaatttaaagccagatgaagctcaacctgttcccagtgac
tgctccaccagtgctagttattcaaataaggacatccaagtaattgggccaatcaacatg
aaaaggggtggacctcgcatatcactctttgaactatgcaagaaactgcagtggccaatg
cctagttttgaatcaatagagcgtacatccaaatcacttattgaatgtggtgaaggctct
gataaaaggaaggtttacaacacttttgcatctcaaatctcgctgacaatacctgactat
ggtttgataaagcttaccggggatgaaagagctgataagaaaagttcacttgattcagcg
gcacttcacatgttatatgagctagaacgacagggaaaaatagccattggaaatcaatga
DBGET
integrated database retrieval system
