Solanum stenotomum: 125842687
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Entry
125842687 CDS
T08385
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125842687
Transcription machinery [BR:
sstn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
125842687
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
HTH_31
XRN_N
Motif
Other DBs
NCBI-GeneID:
125842687
NCBI-ProteinID:
XP_049377975
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Position
10:38095366..38100958
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AA seq
555 aa
AA seq
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MGFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYDPARSLKHFITGDCEPSHSDPFR
VQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNTTKSL
HFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVLDV
PRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQ
QPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWAEA
AGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAV
RFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKF
PADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMR
QDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIEQRALTK
LRNADYFQHITHYSM
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaggctgcatctcaaatggggtttctctgtccaaccccctttctcctccaat
tcatcatcatggccttcttcacattctttcaaaggacgggaggctttatacgatccagct
aggtctcttaaacattttataactggcgactgtgaaccttcacatagtgatcctttcagg
gtgcagacttgtttatctgacccccaactgtggactagtgatacatcagtaactacagaa
ataaagacgcgaaatggcagagggtcccctagcaatgtatatggagatattggcagtcat
aagattgggatatcgcctgacggggagaaaccaacatatttaaatacaaccaaatctctt
cattttagtttactaatgaaaaatcttgatctactggaaaacatgtttgctgattcagag
atgtcaagattagaaagagatattttggtgcaactagaaaagcttggagctttagaattc
tttcatacttgtctctcaaggacacatcattcttctacttttcctaaggttcttgatgtg
ccaagggagcttattaaagaagttgagaaagacgaccttgttggaaatgcaatagataag
gttgtcgtacgttctaggaaaaagcaagagcggaagtcaagaagaaacagagcatccaga
aatgccaatgacattattacagtgcagccacataccaaaaacatccaggaggatttgcaa
cagccaaagttctattctgggaaaagaacacaagcctctagaaataaaagacagaaaatt
gctaagaatgaggcagaaatgtcaagaggtgttaagttggtggcacagttggaaaggatc
aggtcaatccttgaagaagaaactggtcgagtagctactttcagtagctgggcagaagct
gctgggattgaacagaaggagctgcagcaacgcctgcattttggttggtattgcagggat
gagcttctgaaaagtacacggtccttagtcttatatctggcaagaaactacagggggctt
ggagtggcatttgaagacttaattcaggctggaaacatgggtgttctacaaggagctgta
aggtttgaccacactaggggatacaaattctcaacgtacgttcagtattggatacgaaaa
tcattgtcaaaattggtggcacaacatgctagaggggttcgaattcccttcactatatgc
aaagtaataaatcaaatacataaagctcgaaaaactcttagtaggagccatggcaaattt
ccagctgacgatgaaattgccaagttcacgggtctatccacagctaggattgcaatggct
agtaaatgtctgagagttgttggttcaattgatcagaaagttggagattgcatcagcgca
aaagttttggaactcacacccgataaatcaattacaagcccagaggaaactgtcatgagg
caagacatagtagacaacatgtatgctcttttggaaagtttggatccaaaagagcagcaa
gtaatatattttaggtttggtcttgaaactcatcaacgcaaatcactcgaggagattggg
aggctttatggagttagtaaagaatggattaggagaatagaacaaagagctctcaccaaa
ttaagaaacgcggattatttccaacatataactcattactctatgtag
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