Solanum stenotomum: 125843132
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Entry
125843132 CDS
T08385
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125843132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125843132
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125843132
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
125843132
NCBI-ProteinID:
XP_049378312
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Position
10:51574939..51577453
Genome browser
AA seq
739 aa
AA seq
DB search
KKILEESEFLKFIVDSIKNVDDRNEVIPPAKKEHVSVKETLPLVFQFEDEEPLPPEKEEW
EKEIEDLFSEMNMCILESHIGFTNPSVSPMQSGRLSDCQMGNHKLKLDEQIGLICSVCSY
VHLEMKYIFPDFAQRTQGRYERKFFGESPSVLDVDGFRVPDSSTAEDSPIYGEGTVWDLV
PQSAKATMYPHQRGGFEFMWNNIAGGIKIERLREPLSESKGGCIISHPPGTGKTRLTIVF
LQSYLKLFPQCRPVVIAPSNLLLNWEAEFQKWAVDIPFHNLNSKNFSLKEDEGTVGVFHR
LSGAAKKNPHLIRMVKLKSWAKSTSVLGISYDLFRILTGEDGEGYAKELREILLKFPDLL
VLEEGHTARNEHSLVWKALKKVETEKRILLSGTPFQNNIKELYNTLSVVSPKFASDLEQK
WASLSNSIDKNARALEELRDIISPLVHKCSENVKKVSLPGIRDTVIHLKPTDLQKELLKR
VPENPGSFYEQNLMSLISVHPSLVANRKEFSELESQLKERRCRLDPDIGVKMKFVIELIR
LCGGWKERVIIFSQLLDPLNLIKEQLNSLFSWTLGREILYMDGKLDVKQRQISINSLNDP
KSDVKVLLASTKACSEGISLIGASRVVLLDVLWNPSVEQQAISRAYRNGQTKFVHVYCPV
TSKWEVDKIEQQTRKRYHSDVLLSRNEENTSCSVSEDNILESMVKHEGLRHIFEKLSHAP
RVVLTTCFNSGCQPSKGSS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
aagaagattcttgaagaatctgaatttctgaagtttattgttgattcaataaaaaatgtc
gatgatcgtaatgaagtcattcctccagcaaagaaggaacatgtttctgtcaaagaaaca
cttcctttagtatttcaatttgaagacgaggaacctcttcccccagagaaagaagagtgg
gaaaaggaaattgaagatcttttttctgaaatgaacatgtgtatcttggaatcacatatt
ggatttacgaatccatcagtttcgccgatgcagagtggacgactaagtgactgtcagatg
gggaaccacaagcttaagctagatgaacaaattggactcatctgttcagtttgttcatat
gtccatttggagatgaaatacatcttccctgattttgctcagagaactcaagggaggtac
gaaagaaaattctttggagaatccccatcagtcttggatgttgacggcttcagagttcct
gattcttcaacagctgaggattctcctatttatggagaaggaactgtgtgggatttagtt
ccccaaagtgccaaagctacaatgtatcctcatcaacgtggaggattcgagttcatgtgg
aacaacatagcgggaggtataaagattgagaggctgagagagcccctatcggagagtaag
ggagggtgcattatctcacacccacctggcaccggaaaaacccgactcaccatagtgttt
cttcagtcatatctgaagctgttcccacagtgtcggcctgtagtcatagctccatcaaat
ttgcttcttaactgggaagcggagttccagaaatgggcggtggacattcccttccacaac
ttgaacagcaaaaacttctctttaaaggaagatgaaggtactgttggtgtctttcaccgt
ttatccggtgctgcgaaaaaaaatccacaccttatacggatggtgaagctgaaatcctgg
gcgaaaagtacgagtgttttgggaatcagctatgatttgttcaggattctcacaggagaa
gatggagagggttatgccaaagagcttagagaaatactcctaaagtttcctgatctgctg
gtccttgaagaggggcacactgctcggaatgagcacagccttgtgtggaaagcactgaag
aaggttgaaacagagaagcgcatacttctttctggaactccgttccagaataacatcaaa
gagctgtacaacactctctctgtagttagtccaaagtttgcttctgatttggagcagaaa
tgggcttctcttagcaattcaattgacaagaatgcccgagcgttggaagagcttagggat
attatttcaccccttgtccataaatgtagcgaaaatgtaaagaaggtaagccttccaggt
atacgggatacagtaatacatttgaaacccacagacttgcagaaggagttgcttaaaaga
gttccagagaatccgggatccttttatgaacaaaatctgatgtctctgatctctgttcat
ccttcattagtggcaaataggaaggagttctctgagttagaaagtcagctcaaggaaaga
agatgtcggttggatcctgatattggggtaaaaatgaaatttgttattgaactgatcaga
ctatgtggtgggtggaaggagagggttataatatttagccagttacttgatcctctaaac
ctgatcaaggagcagctcaattctctctttagctggactttaggccgagagattctctat
atggatgggaaacttgatgtaaagcagcggcagatatcaataaattctcttaatgaccct
aagagcgatgtcaaagtgcttcttgcatcgacaaaagcctgctcagaaggaataagtcta
ataggagcctcaagagtggttttgcttgacgttctctggaatccctcagtagaacagcaa
gccatcagtcgagcctacaggaatggtcagacaaaatttgttcatgtttactgtccagtg
acatcgaaatgggaggttgacaagatcgaacaacaaacaagaaagagatatcattcagat
gtacttctgtccaggaatgaagagaacacttcatgttctgtgtcagaggataacatactt
gaatccatggttaagcatgagggcctccgtcatatttttgaaaagctatctcatgcacct
cgtgtggtgcttactacatgctttaattctggttgccaaccttcaaaagggagtagttag
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